Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3546
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 37 0.013
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 33 0.16
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 0.66
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 31 0.66
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 31 0.66
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.66
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.88
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.88
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 31 0.88
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 30 1.5
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 30 1.5
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 30 2.0
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 2.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 2.7
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 2.7
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 2.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 2.7
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 29 4.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 6.2
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +3
Query: 27 P*PASAPRCQARCCYPCSLPRGPCSVPGCPSCL-PRRPCSVPGRPSCLPHFSTPLLLG*I 203
P P P C C P P P V G P C P P G P+C P P+L G +
Sbjct: 115 PPPCFGPACPPPCFGPACAPSAPIIVNGPPPCFGPACPPPCFG-PACAPPPPAPILFGSV 173
Query: 204 -CLVPKH 221
C P +
Sbjct: 174 TCCAPNN 180
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +3
Query: 12 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGC--PSCLPRRPCSVPGRPSCLPHFSTP 185
P C P AP A PC GP P C P+C+P P V G P C P
Sbjct: 41 PPPCFDCPPPAPIFVAPPPPPCF---GPACPPPCFGPACVPLAPIIVNGPPPCFGPACPP 97
Query: 186 LLLG*ICLVP 215
G C P
Sbjct: 98 PCFGPACAPP 107
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Frame = +3
Query: 33 PASAPRCQARCCYPCS--LPRGP--CSVPGCP------SCLPRRPCSVPGRPSCLPHFST 182
PA P C C P + + GP C P CP +C P P V G P C
Sbjct: 93 PACPPPCFGPACAPPAPIIVNGPPPCFGPACPPPCFGPACAPSAPIIVNGPPPCFGPACP 152
Query: 183 PLLLG*ICLVPKHRP 227
P G C P P
Sbjct: 153 PPCFGPACAPPPPAP 167
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 27 P*PASAPRCQARCCYPCSLPRGPCSVPGCPS--CLPRRPCSVPGRPSC 164
P P AP +CC R PC GCP+ C RPC P+C
Sbjct: 146 PPPPPAPEAPTQCCGSQPYGRTPCR-SGCPNGDCGCGRPCCYYQNPTC 192
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 75 CSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTP 185
CS+ PC P P C P P P P C P F P
Sbjct: 23 CSMGPPPCPPPPPPMCAP-PPLPCPPPPICPPQFCPP 58
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+LP P SC + C P C
Sbjct: 270 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 310
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+LP P SC + C P C
Sbjct: 271 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 311
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+LP P SC + C P C
Sbjct: 186 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+LP P SC + C P C
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+LP P SC + C P C
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+LP P SC + C P C
Sbjct: 410 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCHQQCIPQC 450
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRP-CSVPGRPSC 164
AP CQ +C C+LP P SC P C P C
Sbjct: 309 APVCQQQCAPQCTLPSAPVCQQCQTSCQQFAPVCQEQCAPQC 350
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 63 CCYP---CSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLP 170
CC P C LP PC P P C + C P P CLP
Sbjct: 645 CCAPPAPCCLPTIPC-CPPIPCCPQPKICCQPA-PVCLP 681
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 63 CCYP---CSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLP 170
CC P C LP PC P P C + C P P CLP
Sbjct: 290 CCAPPAPCCLPTIPC-CPPIPCCPQPKICCQPA-PVCLP 326
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 63 CCYP---CSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLP 170
CC P C LP PC P P C + C P P CLP
Sbjct: 242 CCAPPAPCCLPTIPC-CPPIPCCPQPKICCQPA-PVCLP 278
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 63 CCYP---CSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLP 170
CC P C LP PC P P C + C P P CLP
Sbjct: 970 CCAPPAPCCLPTIPC-CPPIPCCPQPKICCQPA-PVCLP 1006
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 42 APRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
AP CQ +C C+ P P SC + C P C
Sbjct: 186 APVCQQQCAPQCTFPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 72 PCSLPRGP-CSVPGCPSCLPRRPCSVPGRPSCLP 170
P S RG C P PS PR PC P R C P
Sbjct: 1910 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 1943
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 72 PCSLPRGP-CSVPGCPSCLPRRPCSVPGRPSCLP 170
P S RG C P PS PR PC P R C P
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 2527
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 72 PCSLPRGP-CSVPGCPSCLPRRPCSVPGRPSCLP 170
P S RG C P PS PR PC P R C P
Sbjct: 1910 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 1943
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 72 PCSLPRGP-CSVPGCPSCLPRRPCSVPGRPSCLP 170
P S RG C P PS PR PC P R C P
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 2527
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 21 CAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLP 170
C P P AP + P P P PG P P++PC P C P
Sbjct: 103 CQPGPQGAPGAPGKPGRP-GKPGAP-GFPGNPGKAPQKPCEEITPPPCKP 150
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 21 CAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLP 170
C P P AP + P P P PG P P++PC P C P
Sbjct: 103 CQPGPQGAPGAPGKPGRP-GKPGAP-GFPGNPGKAPQKPCEEITPPPCKP 150
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 72 PCSLPRGP-CSVPGCPSCLPRRPCSVPGRPSCLP 170
P S RG C P PS PR PC P R C P
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 2527
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 66 CYPCSLPRGPCSVPGCPSCLPRRPCSVPGRP 158
C PC P+GP PG P P+ PG P
Sbjct: 150 CKPC--PQGPAGAPGAPG--PQGDAGAPGAP 176
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Frame = +3
Query: 63 CCYPCSLPR-GPCS-------VPGCPSCLPRRPCSVPGRPSC 164
CC C P+ C P CP C P +PC P C
Sbjct: 34 CCCGCGTPQPASCGCAPACPQAPSCPVCPPPQPCPAPPAAYC 75
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 33 PASAPRCQARC---CYPCSLPRGPCSV-PGCPSCLPRRPCSVPGRPSCLPHFS 179
P+ AP+CQ C C +L + P PSC P+ C +PSC+ ++
Sbjct: 648 PSCAPQCQPACDPQCISFTLKLPVMTTPPPTPSCQPQ--CQPACQPSCMETYT 698
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +3
Query: 21 CAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTPL 188
C P PA P R P G +PG +RPC+ +P C+P PL
Sbjct: 259 CLPGPAGPPGAPGRPGPPGKA--GANGLPGNSGKPTKRPCNPVTKPPCVPCPQGPL 312
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 72 PCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTPLL 191
PC P P P CP C+ +RP PS +P + P++
Sbjct: 80 PCPPPPPPMPRPSCP-CMMQRPSFY---PSYVPQYYQPMM 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,149
Number of Sequences: 27780
Number of extensions: 215263
Number of successful extensions: 792
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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