Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3545
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88167-1|AAB42226.1|  319|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical pr...    28   6.1  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    27   8.1  

>U88167-1|AAB42226.1|  319|Caenorhabditis elegans Hypothetical
           protein D2092.6 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 589 EQKRGRHTRSTVDESEPTRDRHATPARVMGTGKIDV 482
           E+K  R+TRS VD+S      +ATP R   T K  V
Sbjct: 105 EKKWIRNTRSLVDKSRKINPIYATPIRKKITSKASV 140


>U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical
           protein C08A9.9 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 376 ESVQCMYMYNSRTPATDWIILFCCIFLWSGEGS*ERKLRTKF 251
           E   C + +N R     WI++   ++  +GE   ER+LR  F
Sbjct: 41  EKYPCFWQHNVRGSLDQWILVRAEVYEQTGEVVPERELREMF 82


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 612 KSCEAPS*NKREGGTHVQLWTSRSRHVTDTRPQR 511
           +SCE P  + R   +   LW S   HV ++R +R
Sbjct: 17  RSCEPPGSSSRSRESRGSLWMSMGVHVENSRRRR 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,320,307
Number of Sequences: 27780
Number of extensions: 280770
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)