Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3541
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    29   4.0  

>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 119 FVANFCP-SVKIYFQMTKNQ*IVHATKFKFRTQVARDTNLKMT*YNIYI*VDYYQSRQCD 295
           F AN CP +V I F+ +  + ++H   F+F +++A +  L+ +  +  I    Y + + D
Sbjct: 720 FDANHCPGAVIILFEPSNGKAVLHTGDFRFSSEMANNRVLQSSPIHTLILDTTYCNPRYD 779

Query: 296 FWT 304
           F T
Sbjct: 780 FPT 782


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,067
Number of Sequences: 37544
Number of extensions: 295610
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)