Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3540
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728...    26   8.9  

>08_02_0028 -
           11371547-11371657,11372326-11372518,11372738-11372814,
           11373498-11373608,11374533-11374659,11374745-11375022
          Length = 298

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 103 VSGRAHGPPGVKWLPDP 53
           V+G A GP G  WLP P
Sbjct: 219 VTGEAVGPNGRSWLPSP 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,461
Number of Sequences: 37544
Number of extensions: 155780
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)