Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3539
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0287 - 20460956-20461282,20462051-20462201,20462285-204625...    29   2.7  
12_01_0205 - 1540849-1541245,1541361-1541631,1541964-1542196,154...    29   3.5  

>01_05_0287 -
           20460956-20461282,20462051-20462201,20462285-20462519,
           20462796-20463006,20463122-20463258,20463339-20463467,
           20464558-20465359
          Length = 663

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 558 SFSSIYFDYVPL*IGNGSLNFKFKRISISNLY 653
           SF  IY D VP+ I   SLNFK++ +  +  Y
Sbjct: 308 SFIDIYGDGVPVRIAQSSLNFKYEELRKATNY 339


>12_01_0205 -
           1540849-1541245,1541361-1541631,1541964-1542196,
           1542339-1542601,1542739-1542915,1543032-1543212,
           1543273-1543392,1543513-1543629,1544586-1544645,
           1545103-1545224,1545374-1545541
          Length = 702

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 457 SLDISPCLHVGSTQGSICVTLTIKSIEISSTTEAVSVRFISITCHSKLETDR*ISNSKEF 636
           S  +SP  H  S +GS+   L ++   +SS   A  + F+ +      +    ++ SK +
Sbjct: 378 SFPVSPDFHKASQRGSVTGRLFVRDRYMSSKDMAAGMAFVGLATPG--QPGSWVTESKNY 435

Query: 637 QFRT 648
           QF T
Sbjct: 436 QFWT 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,260
Number of Sequences: 37544
Number of extensions: 269295
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)