Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3539
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family ...    31   1.0  
AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family
           protein 30 protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 41  PQHNIKFYLHQPVGIKLAKHYLFQILEIIS 130
           P HN+KF+ H P G KL K  + + +E  S
Sbjct: 85  PHHNMKFFFH-PEGTKLGKELMAETVEFTS 113


>AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.5 protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 41  PQHNIKFYLHQPVGIKLAKHYLFQILEIIS 130
           P HN+KF+ H P G KL K  + + +E  S
Sbjct: 85  PHHNMKFFFH-PEGTKLGKELMAETVEFTS 113


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 166 CP*ISELCKSLRGYYFQDLEQIMFCELNTYGL 71
           CP +      L G+Y+Q++  + FC L  +G+
Sbjct: 273 CPIMLTFMAFLTGHYYQEMANLTFCSLGLHGM 304


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 470 EMSSEITLMGTLVYSIKILNERLIERYDLSKLFLSYKVEMFWITDRFSISETVCLFSCML 291
           E +S  ++   +  S +  N      YDL+ L ++       IT  F ++ T  LFS +L
Sbjct: 2   ENASTTSVSTAITESPEFYNSLPPANYDLADLTVTPMTYRDRITVEFILNATSWLFSALL 61

Query: 290 ELFVS-PDIVWLSNKQD*IF 234
            +FV     +W+S K   +F
Sbjct: 62  VIFVRLRKAIWMSLKSTIVF 81


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 470 EMSSEITLMGTLVYSIKILNERLIERYDLSKLFLSYKVEMFWITDRFSISETVCLFSCML 291
           E +S  ++   +  S +  N      Y+LS L ++       IT  F ++ T  LFS +L
Sbjct: 2   ENASTTSVSTAITESPEFYNSLPPANYNLSDLTVTPMTFRDRITVEFILNATSWLFSALL 61

Query: 290 ELFVS-PDIVWLSNKQD*IF 234
            +FV     +W+S K   +F
Sbjct: 62  VIFVRVRKAIWMSLKSTVVF 81


>U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical
           protein F14B8.7 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 383 SKLFLSYKVEMFWITDRFSISETVCLFSCMLELFV 279
           SK+   Y  + +W++D +S +    LF+C   +F+
Sbjct: 26  SKVRFRYHEKRYWLSDAWSRAYVFRLFTCFYAIFI 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,083
Number of Sequences: 27780
Number of extensions: 280807
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)