Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3539
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.4  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 606 RFQFRVARNRNKSN*NCLSCRRN 538
           R   R++RNR      C+S RRN
Sbjct: 35  RISNRISRNRVLLRGQCISSRRN 57


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 362 CNLKIVCLSRIFQLTFRLEF 421
           CN  I C++R+ Q   +++F
Sbjct: 478 CNCDIDCINRVVQRGTKMQF 497


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 305 FSCMLELFVSPDIVWLSN 252
           F CM   F  P+I WL +
Sbjct: 42  FFCMATGFPRPEITWLKD 59


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 474 LFTRGEHAGLYLCN 515
           L+  G+H G++ CN
Sbjct: 750 LYKPGDHLGVFACN 763


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,433
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)