Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3535
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    34   0.021
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.11 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   4.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   5.7  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.5  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   9.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.9  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +1

Query: 1   VIQPQVKPVLEKLNVDPDVDVKYFASEAI 87
           V + Q+ P+LE+L  D D DV+YFA++A+
Sbjct: 557 VYEQQIIPLLEQLTKDNDPDVQYFATQAL 585


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = -2

Query: 672 HQLFLILCFHCWFFFFSKVMYFLWXDRXHLPILT**RVNNVNKTF*SMLFFKSRFFFHPI 493
           H  F I  F  WFFFF    +F    R H+ I      +NV   F    +F    FF  +
Sbjct: 66  HHTFTIEAFFYWFFFF--FFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFL 123

Query: 492 FKSV 481
           F S+
Sbjct: 124 FTSL 127


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 434 VLGDRXRSRRQTIVLMTLLKIGWKKNL 514
           VLGD  RS R     ++  K+GWK +L
Sbjct: 31  VLGDIARSPRMQYHAVSFAKLGWKVDL 57


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 128 ILHKGPNIRTVLWSIIDSW 184
           I+HK P +   +WSII SW
Sbjct: 273 IVHKAPWLFQGVWSIIKSW 291


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 ILHKGPNIRTVLWSIIDSW 184
           ILHK P I   +W+II  W
Sbjct: 240 ILHKSPWIFRSVWNIIKGW 258


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  PVLEKLNVDPDVDVKYFASEAIAGIA 99
           PVL  L    D DV+Y+ + +I+ IA
Sbjct: 211 PVLVSLLPSSDTDVQYYCTTSISNIA 236


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 128 ILHKGPNIRTVLWSIIDSW 184
           ++H    + TV+W  I SW
Sbjct: 608 LMHNSHTVHTVVWKTISSW 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,721
Number of Sequences: 5004
Number of extensions: 40628
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)