Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3535
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370...    39   0.003
10_08_0853 - 21076085-21076138,21076188-21076333,21076540-210766...    28   7.8  

>09_02_0058 -
           3704138-3704257,3704355-3704421,3704502-3704641,
           3705332-3705424,3705927-3706109,3706491-3706595,
           3706738-3706818,3706905-3707046,3707207-3707286,
           3707456-3707568,3708051-3708297,3708659-3709051
          Length = 587

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   VIQPQVKPVLEKLNVDPDVDVKYFASEAI 87
           V++  VKP L +L+ DPDVDV+Y+A++A+
Sbjct: 549 VVEKNVKPCLVELSEDPDVDVRYYANQAL 577


>10_08_0853 -
           21076085-21076138,21076188-21076333,21076540-21076645,
           21076739-21076816,21076923-21076979,21077070-21077130,
           21077360-21077412,21077613-21077699,21077820-21077899,
           21079469-21079681,21079824-21080064
          Length = 391

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 669 QLFLILCFHCWFFFFSKVMYFLWXDRXH 586
           + FL   F  +FFFF  V  FL  DR H
Sbjct: 45  EFFLFFFFLLFFFFFFSVCDFLVFDRLH 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,652,561
Number of Sequences: 37544
Number of extensions: 202111
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)