Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3534
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.24 
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   1.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   1.7  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.0  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    24   9.1  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    24   9.1  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 168 CDWVKNAQIIQKMRIYVSFYAVKILNIRTD 79
           CDW+ N+  +  M +  S Y V I NIR++
Sbjct: 350 CDWIPNSSNMFSMIVKNSLYIVDISNIRSN 379


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 106 SVKRNVYPHFLYYLCIFYPITTLAPFFINFQIFYLI--IIVGLKI 234
           +V  N++ +FL+YL   +PI    P   N+  ++LI  +I G+ +
Sbjct: 90  NVTSNIFKNFLHYLKSLFPIIEWLP---NYNPYWLINDLIAGITV 131


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 91  VQDLDSVKRNVYPHFLYYLCIFYPITTLAPFFINFQIFYLIII 219
           V+ +  VKR  +      +CIF+ I +  PF+  + +F  I +
Sbjct: 479 VKPVSVVKRVAFNIPFLLICIFFYIQSSPPFYYGYALFPTIFL 521


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 77  RSVLMFKILTA*NETYILIFCIICAFFTQSQHW 175
           R VL +K L      Y+  FC +  F T+  +W
Sbjct: 146 RKVLTYKSLGIRTAVYVGAFCFVNCFKTRLSNW 178


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 154 FYPITTLAPFFINFQIFYLIIIVGLKI 234
           F+PI T  P   NF+   +++++ L++
Sbjct: 45  FHPINTETPSGFNFKWILIVVVMILRV 71


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 308 PDTHFTHKKNQSGLIISRFAEVM*YIFSP 222
           PD HF  +K+++ +I S  A    Y   P
Sbjct: 172 PDPHFKARKHKNRIITSTLASEYAYFIRP 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,459
Number of Sequences: 5004
Number of extensions: 27891
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)