Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3534
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0028 - 17337455-17337664,17338407-17338697,17339926-173402...    28   2.1  
04_04_0006 - 22102663-22103705,22105659-22105671                       27   3.7  
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    27   6.5  
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718...    26   8.6  

>01_05_0028 -
           17337455-17337664,17338407-17338697,17339926-17340218,
           17340812-17340959,17341177-17341219,17341985-17342307
          Length = 435

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 136 LYYLCIFYPITTLAPFFINFQIFY 207
           L+YL IF+  T LAP  +NF + Y
Sbjct: 313 LFYLGIFFSYTVLAPAALNFFVNY 336


>04_04_0006 - 22102663-22103705,22105659-22105671
          Length = 351

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 142 YLCIFYPITTLAPFFINFQIFYLIIIVGL--KIYYITSANRLIISPDWFFL 288
           +L  FY + TL   F+  QI  L+I  GL  +IY +  A  +++ P   FL
Sbjct: 240 FLGTFYTVLTLYVIFVGGQILSLVINKGLRRRIYMLIFATGILL-PRAMFL 289


>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 136 LYYLCIFYPITTLAPFFINFQIFYLII 216
           L YLCI      +A F +N+ I+YLI+
Sbjct: 282 LQYLCITIYHLLIACFTVNYFIYYLIL 308


>02_05_0020 +
           25070664-25070692,25070934-25071513,25071605-25071817,
           25071918-25072207,25072301-25072412,25072539-25072763,
           25072853-25073464
          Length = 686

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 141 LSVHFLPNHNIGALFYKFSNILSNYYCWTE 230
           L ++ L +H +GAL+Y FS +     CW E
Sbjct: 266 LILYMLASHVLGALWYLFS-VQRQEACWRE 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,747,577
Number of Sequences: 37544
Number of extensions: 144006
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)