Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3534
(377 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065963-1|BAC06175.1| 318|Homo sapiens seven transmembrane hel... 31 1.2
AB065845-1|BAC06063.1| 312|Homo sapiens seven transmembrane hel... 30 2.2
AB065657-1|BAC05883.1| 312|Homo sapiens seven transmembrane hel... 30 2.2
X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein. 29 5.0
U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein. 29 5.0
DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette, s... 29 5.0
AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein p... 29 5.0
AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane ... 29 5.0
AB065740-1|BAC05961.1| 310|Homo sapiens seven transmembrane hel... 29 5.0
AB065774-1|BAC05994.1| 310|Homo sapiens seven transmembrane hel... 28 8.8
>AB065963-1|BAC06175.1| 318|Homo sapiens seven transmembrane helix
receptor protein.
Length = 318
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +1
Query: 181 FFINFQIFYLIIIVG-LKIYYITSANRLIISPDWFFL 288
FF+ F +FY++I+VG L I+ + ++ + +P +FFL
Sbjct: 31 FFVLFLLFYIVIMVGNLLIFLMVFSDPQLHTPMYFFL 67
>AB065845-1|BAC06063.1| 312|Homo sapiens seven transmembrane helix
receptor protein.
Length = 312
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 168 NIGALFYKFSNILSNYYCWTENILHHFCKPTYN*S*LVFFV 290
++ L + SN++ +++C T IL C TYN L+F +
Sbjct: 162 SMSRLHFYDSNVIHHFFCDTSPILALSCTDTYNTEILIFII 202
>AB065657-1|BAC05883.1| 312|Homo sapiens seven transmembrane helix
receptor protein.
Length = 312
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 168 NIGALFYKFSNILSNYYCWTENILHHFCKPTYN*S*LVFFV 290
++ L + SN++ +++C T IL C TYN L+F +
Sbjct: 162 SMSRLHFYDSNVIHHFFCDTSPILALSCTDTYNTEILIFII 202
>X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein.
Length = 1704
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 LPNHNIGALFYKF-SNILSNYYCWTENILHHFCKPTYN 266
LPNH +G F N + YC + + H+CK YN
Sbjct: 1252 LPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCK-KYN 1288
>U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein.
Length = 1704
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 LPNHNIGALFYKF-SNILSNYYCWTENILHHFCKPTYN 266
LPNH +G F N + YC + + H+CK YN
Sbjct: 1252 LPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCK-KYN 1288
>DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), member 3 protein.
Length = 1704
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 LPNHNIGALFYKF-SNILSNYYCWTENILHHFCKPTYN 266
LPNH +G F N + YC + + H+CK YN
Sbjct: 1252 LPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCK-KYN 1288
>AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein
protein.
Length = 1708
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 LPNHNIGALFYKF-SNILSNYYCWTENILHHFCKPTYN 266
LPNH +G F N + YC + + H+CK YN
Sbjct: 1256 LPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCK-KYN 1292
>AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane
specific ATP-binding cassette protein protein.
Length = 1704
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 LPNHNIGALFYKF-SNILSNYYCWTENILHHFCKPTYN 266
LPNH +G F N + YC + + H+CK YN
Sbjct: 1252 LPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCK-KYN 1288
>AB065740-1|BAC05961.1| 310|Homo sapiens seven transmembrane helix
receptor protein.
Length = 310
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 181 FFINFQIFYLIIIVG-LKIYYITSANRLIISPDWFFLC 291
FF+ F I YL+ +VG + + + + + + +P +FFLC
Sbjct: 27 FFVVFLIVYLVNVVGNIGMIILITTDTQLHTPMYFFLC 64
>AB065774-1|BAC05994.1| 310|Homo sapiens seven transmembrane helix
receptor protein.
Length = 310
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 184 FINFQIFYLIIIVGLKIYYIT-SANRLIISPDWFFL 288
F+ F IFY+ +VG + +T ++R + SP +FFL
Sbjct: 26 FVIFLIFYMGTVVGNMLIIVTIKSSRTLGSPMYFFL 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,893,149
Number of Sequences: 237096
Number of extensions: 898696
Number of successful extensions: 1809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -