Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3534
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.4  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 157 KKCTDNTKNED 125
           ++C DN KNED
Sbjct: 99  RQCVDNAKNED 109


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 320 LDWAPDTHFTHKK 282
           L+W P TH+ H K
Sbjct: 40  LNWLPRTHYDHLK 52


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 85  SDVQDLDSVKRNVYPHFLYYLCIFY 159
           + V  +D   R V+P F   + +FY
Sbjct: 418 NSVSKIDRASRIVFPLFFLAINVFY 442


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 165 DWVKNAQIIQKMRIYVSF 112
           DW   A +I ++++Y+ F
Sbjct: 470 DWKYVAMVIDRLQLYIFF 487


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 264 YKSVCRSDVIYF 229
           YKS C  DV YF
Sbjct: 141 YKSFCEIDVEYF 152


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 325 YCELTVLPFKPSRRMTV 375
           YCE  V+   P+R +T+
Sbjct: 271 YCEPQVVIVSPTRELTI 287


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 264 YKSVCRSDVIYF 229
           YKS C  DV YF
Sbjct: 149 YKSSCEIDVEYF 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 264 YKSVCRSDVIYF 229
           YKS C  DV YF
Sbjct: 145 YKSSCEIDVEYF 156


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 145 DNTKNEDIRFVLRCQDLEHQNRSYYQ 68
           D  +NE+I F   CQ  ++   S  Q
Sbjct: 610 DIKQNEEITFDYMCQSSKNSENSIMQ 635


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = +1

Query: 79  ICSDVQDLDSVKRNVYPHFLYYLCIFYPITT 171
           +C+   D   +    YP  L  +C  Y + T
Sbjct: 807 VCNSYVDASYMIAFAYPIMLIVVCTVYAVLT 837


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 333 FAIHLRLGP*YAFYTQKKPVRTNYKS 256
           FA+  RL   Y  +T +KP +  Y S
Sbjct: 101 FAVPARLTRHYRTHTGEKPYQCEYCS 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,031
Number of Sequences: 438
Number of extensions: 2093
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)