Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3533
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0309 - 14186880-14187151,14187428-14188652                       29   3.7  
03_06_0610 + 35052455-35053429,35054936-35055511                       27   8.5  

>04_03_0309 - 14186880-14187151,14187428-14188652
          Length = 498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 59  IYSCLWEGFVKCGIKSGADLVG---PTYCAAPHLP 154
           +++CLW         S   L+G   P  CA PHLP
Sbjct: 29  VWACLWVAAAASAAASALALLGVPLPCTCARPHLP 63


>03_06_0610 + 35052455-35053429,35054936-35055511
          Length = 516

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 60  IEKDRACEGDSKGWSRPSAM 1
           I   RAC+   KGW+RP+A+
Sbjct: 237 IRWSRACDATWKGWARPAAV 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,856
Number of Sequences: 37544
Number of extensions: 238814
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)