Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3530
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    26   5.6  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.5  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   7.5  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   9.9  

>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 372 SNLTMLPTRTLARAVLRRIYHRFGNTISLDSRKLK 476
           S+L +L  R L R +   +YHR    ISLD R L+
Sbjct: 385 SSLGILKIRRLKR-IQMALYHRCNLPISLDPRSLR 418


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 633 HVYPTSSSVGQLNSNLIFECKFGML*NLFN 544
           H+  T  S G L+S LIF  K G    LFN
Sbjct: 578 HLQFTRKSTGSLSSVLIFVKKIGCQSELFN 607


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 251 AVCYNLYVSASWVFYYF 301
           ++ +NL +S +W +YYF
Sbjct: 540 SIIFNLGISNNWAYYYF 556


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 542 NFTSIVGTTMVSTQK*SMMQKDLKFPTI*GYCVSEPVVDSAKHGSC*GSCWQ 387
           NF   +  + + T   S++ K  K  TI G C       + ++G C G+ +Q
Sbjct: 218 NFDYYIEKSFLKTA--SLISKSCKASTILGQCSPTVATAAGEYGRCIGTAFQ 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,983
Number of Sequences: 5004
Number of extensions: 67817
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)