Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3530
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524           29   2.5  
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334...    29   3.3  
07_03_1728 + 29076733-29079069                                         28   5.9  

>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
          Length = 651

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 341 VTGIAGELTGLKPDNVANTNPSKSRASQNLPPVRK 445
           VTG   E   LK  + ANTN ++ R S+ +P VR+
Sbjct: 170 VTGATAEPEVLKGASFANTNVTEPRVSERVPLVRE 204


>11_06_0606 +
           25432471-25432517,25433098-25433173,25433272-25433448,
           25433576-25433653,25433749-25433853,25434042-25434108,
           25434219-25434280,25434371-25434510,25434717-25434843,
           25434917-25435031,25435220-25435308,25435699-25435782,
           25435961-25436737
          Length = 647

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 90  HVPTYKAGTSHARIPWGVNVEFIG 19
           H P ++    H+ +PWG NV  +G
Sbjct: 149 HAPKFRPCKGHSLVPWGKNVILVG 172


>07_03_1728 + 29076733-29079069
          Length = 778

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  PPRNSGVRSSRFVRRYVNFLGIPPPLSSGE 129
           PP+  G +SS     Y+ F+  PPPL  G+
Sbjct: 29  PPQKIGTKSSGGRATYIVFVEPPPPLGHGD 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,296
Number of Sequences: 37544
Number of extensions: 439037
Number of successful extensions: 956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)