Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3530
         (668 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase...    27   0.40 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   8.7  

>AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase
           protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 354 QVSSRDSNLTMLPTRTLARAVLRRIYHRFGNTISLDSRKLKIFLH 488
           Q+++RDS +TM       R VL +++  +G+  +LD  +  + LH
Sbjct: 90  QINNRDSAITMQGGGLGGRFVLDQMHFHWGSEHTLDDTRYGLELH 134


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 545  LNKFHNIPNLHSKMRLE 595
            L  +HNI N +S MRLE
Sbjct: 2997 LPSYHNITNNNSVMRLE 3013


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 406 ARVRVGNIVRFESREL 359
           AR+ V NI +FE REL
Sbjct: 794 ARIGVANIRQFEEREL 809


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 771,099
Number of Sequences: 2352
Number of extensions: 16778
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)