Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3526
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    27   2.9  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   2.9  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   8.9  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   8.9  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 307 LYSEARKVRGSPLMLVAGPLVSPHG 233
           +Y  ++ VRGS + ++ G +  PHG
Sbjct: 53  VYKSSKAVRGSKIRVIWGTIARPHG 77


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 683 TPLIQGEVNTSKEN**TLRIELPVPSPAQFVKLD 582
           TPL  G +N + +N   + ++ P P PA+  ++D
Sbjct: 601 TPLNSGALNETVQNLKNMELDDPAPQPAKHSRVD 634


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 668 GEVNTSKEN**TLR--IELPVPSPAQFVKL 585
           G+V   KE    LR  +ELP+ SP +FVKL
Sbjct: 179 GDVGGCKEQIERLREVVELPLLSPERFVKL 208


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 111 MRHPL*GISCKVSV*LQRLSHPSNRNALLLLIRTRRVGGTYPCGLTRGPATSISGLPLTL 290
           M HP    S KV       ++PS  + +  L+R+  +     CGLTRG A S +  P T+
Sbjct: 6   MHHPYQAFS-KVGKCEISQTNPSFSSGMRCLVRSADIQFKGICGLTRGFA-SFNKPPQTI 63

Query: 291 RASL*RTFSE 320
              + + F++
Sbjct: 64  TEKIVQKFAQ 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,166
Number of Sequences: 5004
Number of extensions: 66408
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)