Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3521
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    38   0.001
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   4.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   8.4  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 644 FRRAGPDGLAFCALLHHFLPDAFDYFKTD 730
           F R+  +GLAFCAL+H   PD  DY K D
Sbjct: 149 FTRSWTNGLAFCALIHQHRPDLLDYNKLD 177


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 665 GLAFCALLHHFLP 703
           GLA CA+ +HFLP
Sbjct: 408 GLALCAIAYHFLP 420


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 520 NF*SDREQHTAGAEDRVSIR*VPAAREAKLNKQSQNVKLENFSTSWAGRSRVLRFTT 690
           +F   RE  T       SI       +A LNKQSQ   LEN      G++ V  F+T
Sbjct: 537 DFFEPREASTPSESSNSSIESEDNLDKAVLNKQSQWHDLENPIVLKKGQAPVNNFST 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,687
Number of Sequences: 5004
Number of extensions: 38179
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)