Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3518
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898...    29   2.7  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    29   4.7  
04_03_0137 + 11703765-11703980,11704719-11705471                       29   4.7  
06_02_0080 + 11518393-11518398,11520318-11520401,11520846-115209...    28   6.2  

>01_06_0518 +
           29988613-29989193,29989596-29989622,29989759-29989891,
           29990006-29990240,29990524-29990566,29990672-29990952,
           29991293-29991423,29991812-29991946
          Length = 521

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 207 SYCHRTPTGTPN*SGHKYCYIK 142
           SYCH +PTG  N  G K  Y K
Sbjct: 194 SYCHHSPTGWKNFGGQKLWYPK 215


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 177 EYQSGYGDSNSVPEGVLHNFVIPCKI-----ALSTIHLVETKHNLPNY 305
           EYQ G   +N  P+ +   + I C +         +H+ +T HN P +
Sbjct: 647 EYQLGRSKTNQAPKEIQKVYQIDCNLMPLMPCTVNVHMTQTPHNSPTH 694


>04_03_0137 + 11703765-11703980,11704719-11705471
          Length = 322

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 177 EYQSGYGDSNSVPEGVLHNFVIPCKIALSTIHLVETKHNLPNYYNKRN*KVNL 335
           E   G   S++V  G       PC  + +T HL++ KH+ P +   R   V L
Sbjct: 30  EIADGSSTSDTV-HGAADGVCFPCGTSTATAHLLQPKHSQPQHEVLREGHVGL 81


>06_02_0080 +
           11518393-11518398,11520318-11520401,11520846-11520974,
           11521362-11521450,11521589-11521772,11522414-11522504,
           11522816-11522970,11523190-11523282,11523473-11523565,
           11523715-11523795,11523867-11524016,11524134-11524229,
           11524489-11524566
          Length = 442

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 144 LCNSIYGQTS*EYQS-----GYGDSNSVPEGVLHNFVIPCKIALSTIHLVETKHNLP 299
           +C   Y  T  EY       G+     VPE VL N+V P  +  +T+  +  +H LP
Sbjct: 13  ICQQCYETTLQEYAKRFKIPGFRPGKVVPENVLINYVGPKHVQDATVEAI-LRHTLP 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,948
Number of Sequences: 37544
Number of extensions: 253275
Number of successful extensions: 425
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)