Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3517
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    28   1.5  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    28   1.5  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   3.4  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   4.5  

>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 362 FVLVASASPSPHHR-PYIARSPSLGHRKPRVRRLKVLQLIIIDGVRSKSKSASYTKKP 532
           F ++ +A   PHH+ P + +   L H    +    V   +   GV S S +A+ +K P
Sbjct: 198 FAIIYAAGGIPHHKPPNLFKEMPLAHGFGGIVSAFVYAGVFFSGVESVSMTAAESKNP 255


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 377 SASPSPHHRPYIARSPSLGHRKPRVRRL 460
           SA+P+PH+ P    +P+ G + P+V  +
Sbjct: 16  SAAPTPHNTPSGTSAPNFGAKAPQVNTI 43


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -2

Query: 687 IYQLNILYYINFNKLC--FDAS 628
           + + N+L Y NF KLC  FDAS
Sbjct: 204 VTESNLLVYFNFKKLCVLFDAS 225


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 534 KYICNNKDFINFFHLNAPPVNLRIWS*RSVHWRHRNIT 647
           +Y   +   I   H +  PVN RIW     H   +N T
Sbjct: 654 RYTLQDSFHITMIHESQKPVNSRIWEQYLQHMHDKNTT 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,262
Number of Sequences: 5004
Number of extensions: 46918
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)