Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3517
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0228 + 1832172-1832446,1832524-1832698                           31   1.1  
01_05_0734 + 24735939-24736790                                         30   2.0  
08_02_0593 + 19078264-19078609,19078724-19082256                       28   8.0  

>08_01_0228 + 1832172-1832446,1832524-1832698
          Length = 149

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 433 AERWRSSDVRAMMGRRRRGSDENKLLW 353
           A+RWR  DV  M GRRR  S  + + W
Sbjct: 12  AQRWRRIDVNLMKGRRRPDSRRSIVTW 38


>01_05_0734 + 24735939-24736790
          Length = 283

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 441 LRWPSDGDR-AMYGR*WGDGDAEATRTNYF--GFI 346
           +R+PSD D+ A Y    GDGD E + TNY   GF+
Sbjct: 86  VRYPSDKDKTASYFSVSGDGDGEDSPTNYLPEGFL 120


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 398 HRPYIARSPSLGHRKPRVRR 457
           HRP+   S S GH+K +V+R
Sbjct: 690 HRPFSTNSASFGHKKLKVKR 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,195
Number of Sequences: 37544
Number of extensions: 288337
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)