Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3510
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              71   8e-15
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 71.3 bits (167), Expect = 8e-15
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +1

Query: 625 EMATAASSSSLEKSYELPDGQVITIGNERFRCP 723
           EMATAASSSSLEKSYELPDGQVITIGNERFRCP
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCP 33


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 228  LRVAPEEHPVLLTEAPLNPKANREKM 305
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 581 HQGESCATSLLTSSRKWPPLHP 646
           H G   +   +  +RK PPLHP
Sbjct: 85  HTGFGGSIITIPPTRKLPPLHP 106


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 371 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 502
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +2

Query: 458 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 556
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 431 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 339
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,163
Number of Sequences: 438
Number of extensions: 5399
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)