Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3507
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    29   0.31 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    28   0.71 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   8.8  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   8.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   8.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.8  

>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +2

Query: 173 EILRRNCVTVKLKRTYSCTCTCSIYILNIHFDAKYLGSFL*RK*NKECKFDSLTYSMYNS 352
           E+LR   + ++L++ Y C    + YI++ +   KYLG        ++C FD +TY  YN+
Sbjct: 93  EVLRE--MLLELRKKYKCWIFTNAYIVHANRVLKYLGI-------EDC-FDGITYCDYNA 142


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 381 YLYNIARGILLLYMLYVNESNLHSLFYFR 295
           YL+ I R    +Y+L +    LHS+F  R
Sbjct: 122 YLFKIVRAPFYIYVLLILSKRLHSIFILR 150


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 69  ITLLPRSALVLLDVYLGVIWSCTS-SFPQLKK 161
           I  LPRS  V++ V +  I  CTS SF +L+K
Sbjct: 260 IYTLPRSKSVIIPVLISTIHHCTSDSFNELEK 291


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 447 YDKVNCIISSYEVMNGSLC 503
           YD  +C++ S+E ++ SLC
Sbjct: 447 YDFTHCLVDSFENISHSLC 465


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 461 IYFVITGNMWLTYYHTYNVHNAKTF--VYIYTILHAVYYYCTCCMLTSRICILCFISVTG 288
           I F I+ + +L+     + ++ K F  + I   L A+ +YC   ++   +C +       
Sbjct: 246 ILFPISSSSYLSSASETSGNSHKKFKPLTIRQCLKALPFYCPSSLILPTVCYVSLPPFVS 305

Query: 287 SYLNISHRN 261
           S L ++ RN
Sbjct: 306 SVLPLTFRN 314


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  RSALVLLDVYLGVIWSCTSSFPQLKKNNNEKFFDEIV 194
           RS  +L D+Y   I SC +S  QL   NN++   E +
Sbjct: 577 RSLTLLTDIYNSDIRSCINSL-QLLSLNNKRIDSETI 612


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 138 SSFPQLKKNNNEKFFD 185
           SSFPQ K +  E FFD
Sbjct: 188 SSFPQQKSSTYENFFD 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,011
Number of Sequences: 5004
Number of extensions: 37289
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)