Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3507
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    28   3.4  
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    28   3.4  
Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical...    27   6.0  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U41992-3|AAL02507.1|  134|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 491 IHYLIRAYNTIYFVITGNMWLTY-YHTYNVHNAKTFVYIYTILHAVYYYCTCCMLTSRIC 315
           +H ++     ++FV TG ++  Y    +  H        + I  A  +   CC++TS +C
Sbjct: 438 LHAILMILGWLFFVPTGFLFARYGRQVFKNHTIYGMFVWFQIHRASTFIGVCCIVTSILC 497

Query: 314 IL 309
           IL
Sbjct: 498 IL 499


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 479 IRAYNTIYFVITGNMW 432
           I A+NTIYF I GN W
Sbjct: 193 IYAFNTIYFPIIGNYW 208


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 408 RSQRQNIRLYLYNIARGILLLYMLYVNESNLHSLFY--FRYRKLPKYFASKCIFKIYILH 235
           +S  +  R+Y Y+++R  L  ++ +  +S+     +   +Y KLPK +    IF    L 
Sbjct: 116 KSMEERSRIYNYSLSRFSLDFWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFNELFLI 175

Query: 234 VHVHEYVRFNFTVTQFRRRISH 169
            HV   +  +     +R  +SH
Sbjct: 176 DHVDVMIDGDKLFGDYRFLLSH 197


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 479 IRAYNTIYFVITGNMW 432
           I A+NTIYF I GN W
Sbjct: 193 IYAFNTIYFPIIGNYW 208


>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 99  LLDVYLGVIWSCTSSFPQLKKNNNEKFFDEIV 194
           +L +++ V W+ T+ FP L     E+++ +++
Sbjct: 133 VLSIFIFVAWTITTYFPMLPDEMREEYYSDVL 164


>AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical
           protein Y38F1A.3 protein.
          Length = 858

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 354 LLLYMLYVNESNLHSLFYFRYRKLPKYF 271
           LL Y+ YV E   H    F+YR LP++F
Sbjct: 535 LLPYLPYVGEQE-HGSIEFKYRYLPEFF 561


>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 512 SFPAERTIHYLIRAYNTIYFVITGNMWLTYYHTYNV 405
           S P    I +++  YN I+F++T    L YYH Y +
Sbjct: 85  SSPTWEDIAFVV--YNFIFFIMTLTSGLFYYHLYQL 118


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 228 VHEYVRFNFTVTQFRRRISHYYFFLIEE 145
           V+E+ RF F  TQF   IS Y F  I++
Sbjct: 4   VYEFSRFQFIPTQFFLSISQYLFNRIDK 31


>AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical
           protein Y38H6C.21 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 482 LIRAYNTIYFVITGNMWLTYYHTYNVHNAKTFVYIYTILHAVYYY 348
           L+  YN I F +T      Y+H Y +       Y  + +H +Y +
Sbjct: 155 LLEIYNCILFAMTIITGSFYFHIYKLFRRLPSTYFSSKIHLLYQF 199


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 358 YITIVHAVC*RVEFAFF-VLFPLQE 287
           Y+ I+H++C R  F FF ++FP  E
Sbjct: 374 YLFIIHSICFRSTFTFFRLIFPFFE 398


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 372 CIDINECFGVVNVICMIICKPHVT 443
           CID+NEC G + V C  + K H T
Sbjct: 249 CIDVNECEGEIRV-CSPLSKCHNT 271


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 372 CIDINECFGVVNVICMIICKPHVT 443
           CID+NEC G + V C  + K H T
Sbjct: 249 CIDVNECEGEIRV-CSPLSKCHNT 271


>U41992-3|AAL02507.1|  134|Caenorhabditis elegans Hypothetical
           protein F32E10.8 protein.
          Length = 134

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +3

Query: 363 VQYCIDINECFGVVNVICMIICKPHVTCYDKVNCIISSY 479
           +Q+ + I+ C     +        H+ C+D++ CI  S+
Sbjct: 8   IQFFLFISNCLCTTQLFARCPSLTHIRCFDQLTCIRKSW 46


>AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical
           protein T17A3.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 245 YILNIHFDAKYLGSFL*RK*NKECKFDSLTYSMYNSNIPRAILYRYKRMF 394
           Y+L I +D  Y       K  K CK    +  M NS + R++L  Y R F
Sbjct: 135 YMLMITYDYDYETLLQELKDFKICKLFISSNFMQNSKLHRSLLVNYSRQF 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,201,421
Number of Sequences: 27780
Number of extensions: 214197
Number of successful extensions: 687
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)