Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3507
(512 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.26
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.26
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.26
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.26
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.26
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.26
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.26
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.26
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 21 7.5
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 21 7.5
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 21 7.5
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 181 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 210
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 181 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 210
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 181 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 210
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 181 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 210
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 181 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 210
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 181 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 210
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 249 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 278
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 219 YVRFNFTVTQFRRRISHYYFFLIEETMMYNS 127
YV FT+ Q RRR +Y+F LI ++ +S
Sbjct: 249 YVDVTFTI-QIRRRTLYYFFNLIVPCVLISS 278
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +2
Query: 305 NKECKFDSLTYSMYNSNIPRAIL 373
N + FD + + + N+N+ IL
Sbjct: 390 NNDFNFDDVNFRIMNANVNELIL 412
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +2
Query: 305 NKECKFDSLTYSMYNSNIPRAIL 373
N + FD + + + N+N+ IL
Sbjct: 390 NNDFNFDDVNFRIMNANVNELIL 412
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +2
Query: 305 NKECKFDSLTYSMYNSNIPRAIL 373
N + FD + + + N+N+ IL
Sbjct: 390 NNDFNFDDVNFRIMNANVNELIL 412
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,420
Number of Sequences: 438
Number of extensions: 2602
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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