Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3503
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103     31   1.0  
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    29   5.4  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    29   5.4  
07_01_1164 - 11016314-11017688,11019144-11019181                       28   7.2  
02_01_0733 - 5477110-5477421,5478146-5478166                           28   7.2  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    28   9.5  

>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
          Length = 196

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 377 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 475
           CGD+ C   G+FC G  D     S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 305 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 478
           + +ER+    L   E    +G ++C  ST         G+K+  DG D+   D   +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -1

Query: 460 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 281
           T++ + S+A +LF +     F   +V  +   I++ WF  +     + L+V E+TI  + 
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282

Query: 280 FP 275
            P
Sbjct: 283 NP 284


>07_01_1164 - 11016314-11017688,11019144-11019181
          Length = 470

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 756 LR*VSWTAEIVSVLVRDKISGLDIATVRVFALAVKYLFVQFQCCY 622
           +R   W A+     VRD  +G  +A  R F+  +K+L    + CY
Sbjct: 145 VRRFEWFADKAGKFVRDVETGCSLAHYRFFSPLIKHLLEGKRLCY 189


>02_01_0733 - 5477110-5477421,5478146-5478166
          Length = 110

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 275 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 448
           W   +K+ K +   R+   L Y     C D  LA GD TC  R L    +G  D  DG  
Sbjct: 34  WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92

Query: 449 EN 454
           ++
Sbjct: 93  DH 94


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 275 WKDAVKNCKLKNKERKIKPLLYTEEPLCQ--DGFL---ACGDSTCIERGLFCNGEKDCGD 439
           W+D V   + + + R+ KPL++ ++   +    FL     GD       LF   E+D  D
Sbjct: 59  WRDVVDEVEPEVQRRRAKPLVFFKDGRYEPASAFLLHDVAGDCDVTSLSLFREEEED-DD 117

Query: 440 GSDENSCDIDNDPNRAPPCDSSQCV 514
           G D +     N+ +    C+   C+
Sbjct: 118 GGDRDFFARYNNDDMVGSCNGLICL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,795,798
Number of Sequences: 37544
Number of extensions: 497113
Number of successful extensions: 1571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)