Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3502
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   2.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   3.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.6  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 569 ILATLQESHLKFKIWKNLSIYIYKNDYLVS**KTSFS 459
           +L  LQ  HL F +   +  Y+   DYL++  KTSF+
Sbjct: 439 VLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFA 475


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 114 ITQIIILRVLFLLHDVIPSPWKSIV 188
           +T  I+L ++F+LHD   S W+S+V
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLV 244


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 308 RLQNSRLTIWFKRHFA*YATFVNKGPFY 391
           ++ +S + IW + HF  +A++  K  FY
Sbjct: 75  KIADSNVVIWDEAHFGKFASYYLKHEFY 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,109
Number of Sequences: 5004
Number of extensions: 68281
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)