Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3501
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   4.0  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   5.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.0  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   7.0  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.3  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    25   9.3  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 194 FVCSRLSTPDLSHCLCMENKPGIFM 268
           F  S+L  PDL+H   + N  G+F+
Sbjct: 191 FAQSKLEDPDLAHSQAISNSLGLFL 215


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 107 KIILSFYFYSVISVERCNRS 166
           +I    YFY ++  E+CNRS
Sbjct: 167 QIAAKLYFYYILFFEKCNRS 186


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 553 NNNAVCPNDITSRDFIVVEQTIGTCPTNLLYGTSLQECHYIAPNDRDV 410
           N+N +C ND   R  +++ +TI   P++ + G S    +   P+  +V
Sbjct: 366 NSNGLCRNDSKCRFLMILPETIIKSPSSFI-GDSYNIANIDPPSSMNV 412


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 339 ALTETADCHGVPRPPRFPR 395
           AL   +D HG+  PP+F R
Sbjct: 51  ALRNVSDYHGISMPPKFKR 69


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 619 YVVK*LS*LIRQCLWCLHSYEINNNAVCPNDITSRDF 509
           +++K  + L+ + + CLHS ++  N   PN+  S ++
Sbjct: 503 FLLKTATQLLNKLVECLHSSDLGLNDTTPNEKLSTEY 539


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 303 CRGDQVCESCVSALTETADCHGVPRPPRFPRSLFIITSRSFG 428
           C  DQ C  C   L   A C G      + R L + ++ S G
Sbjct: 90  CDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLG 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,952
Number of Sequences: 5004
Number of extensions: 50670
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)