Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3499
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    28   0.92 
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    28   1.2  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    27   2.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.7  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    26   3.7  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 136 RGRRAQTAKFVWIIRDSMIFTADT-LDSKTFA*STLVRWTRLAGNA 2
           R RRA   K++W   DSM +  +T L++K+   S    W   AG A
Sbjct: 515 RARRAAMEKYLWSEADSMWYDYNTKLETKSTYESATAFWALWAGVA 560


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 136 GKKLSSCITSRTVRGRQYGVSVSVL*SLTYPSSHTHRIEALL 261
           G K+ SC+     RG+  G  V ++ S ++  S  H ++ LL
Sbjct: 335 GIKIQSCLVGGFRRGKPVGADVDMVLSPSHTHSTKHLVDVLL 376


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 269 RYGREARSPRARCNLRTC*AA*QVRAVSNCTKERNQFQFRPTTTR 403
           RYGR   SP +R + +       +R+ S   KER + ++RPT  R
Sbjct: 205 RYGRSP-SPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRRR 248


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -2

Query: 539  QLFDEDTIIKMRGDDGQEHETLIRAGESYCLALDRERARSCNPNT 405
            Q FD+   + ++ D+ ++ + L  A +    ++DR+ + + NP++
Sbjct: 4305 QAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDS 4349


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 227 GYVSDYNTDTETPYCRPRTVRDVMHDES 144
           G ++ +  + E PY RP+  + ++HD S
Sbjct: 183 GKITIFTREDEVPYDRPKLSKSLLHDIS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,778
Number of Sequences: 5004
Number of extensions: 47721
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)