Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3498
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       27   2.8  
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    25   8.6  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 635 TFIKDCVCKKKLRDSTQTDLRARLKEHTVPYMDIR 739
           T++K C   K L    + D+  + K HTV  MD++
Sbjct: 5   TYVKQCAYGKTLVRFMKKDICPKTKTHTVYEMDVQ 39


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 681 RKQISEHALKNTQYHI 728
           RK+++EHALK   +H+
Sbjct: 156 RKELAEHALKQAAFHL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,806
Number of Sequences: 5004
Number of extensions: 63946
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)