Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3498
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0998 - 10136050-10138356                                         29   5.1  
08_01_0312 + 2764744-2767390,2767632-2767990                           28   9.0  

>08_01_0998 - 10136050-10138356
          Length = 768

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 395 KWYMTEEYGGRKLVAPIPGDWETCKRMMSILTKRSNVSSSVI 520
           KW +  + GG      IP    TC  ++  L  RSNV +  I
Sbjct: 452 KWLIILDLGGNHFTGTIPSWIGTCNPLLRFLILRSNVFNGSI 493


>08_01_0312 + 2764744-2767390,2767632-2767990
          Length = 1001

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 413 EYGGRKLVAPIPGDWETCKRMMSILTKRSNVSSSV 517
           E  G  L   IPGD  +CKR++S+  + + ++  +
Sbjct: 521 ELAGNALGGGIPGDIGSCKRLVSLRLQHNELTGEI 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,159
Number of Sequences: 37544
Number of extensions: 391066
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)