Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3498
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical...    29   3.5  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical ...    29   3.5  

>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
 Frame = -3

Query: 669 NFFLQTQSLMKV*IELIIWYHLSHTQYKRDKFLLWIIKLQNKFP---*HIRSTMTLDETF 499
           N FL+T +L    IE+   Y LS +     + + WII+++N  P     IR  +TL+ + 
Sbjct: 423 NVFLETLNLKSPKIEMSGIYVLSISNMDIVQQVKWIIEVENDEPNAQLTIRDPLTLNISN 482

Query: 498 DLFV----RILIILLHVSQSP 448
            LF+     + I  L VS SP
Sbjct: 483 QLFLPLNTNLSIFCLAVSSSP 503


>AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK697.1 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 735 ISIYGTVCSLRRALRSVCVESLNFFLQTQSLMKV*IELIIWYHL 604
           I+I+   CS+     S  V + NF+LQ +SL+K  + + +W++L
Sbjct: 199 IAIFVVYCSMA----SYSVINYNFYLQKESLLKTDLTVEMWHNL 238


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 108 NPPDSLGG*AHLTCLAPPLPSSTFTEIQIPCFFRH-SD--LVGLSDLDP 245
           N P SL G   L    PPL       I +  F RH SD  ++ L+DLDP
Sbjct: 510 NAPGSLYGPEGLLQGPPPLSQDQLNSILLGAFTRHLSDPAMIPLADLDP 558


>AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical
           protein M151.7 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 108 NPPDSLGG*AHLTCLAPPLPSSTFTEIQIPCFFRH-SD--LVGLSDLDP 245
           N P SL G   L    PPL       I +  F RH SD  ++ L+DLDP
Sbjct: 51  NAPGSLYGPEGLLQGPPPLSQDQLNSILLGAFTRHLSDPAMIPLADLDP 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,202
Number of Sequences: 27780
Number of extensions: 348732
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)