Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3498
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 396 NGI*QRSMEGENLLRRSQVTGRHVR 470
           NG+  R ++ ENLL  S+  G  V+
Sbjct: 28  NGVVHRDLKPENLLLASKAKGAAVK 52


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 623 SSIYTFIKDCVCKKKLRDSTQTDLRA 700
           S  +  + DC+ KK+    TQT L A
Sbjct: 282 SEYWEEVFDCLLKKERNGPTQTTLNA 307


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 623 SSIYTFIKDCVCKKKLRDSTQTDLRA 700
           S  +  + DC+ KK+    TQT L A
Sbjct: 372 SEYWEEVFDCLLKKERNGPTQTTLNA 397


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 195 PCFFRHSDLVGLSDLDPRKKLPC*MYIDIC*LLITLYNILTKRKGRPKKIWMDCVKDAY 371
           P   R+ +LVGL DLD  ++      +D    L+ +  +   R    K +W   ++  Y
Sbjct: 164 PSNVRNCELVGLHDLDQSQEYVRSKLVDFLNDLVAI-GVAGFRVDAAKHMWPSDLRTIY 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,804
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)