Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3497
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z68338-4|CAE48509.1|  104|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      29   4.1  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    29   4.1  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    29   4.1  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    27   9.6  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    27   9.6  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   9.6  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    27   9.6  

>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 478 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 597
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 551 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TEN 658
           WHS+   +  CL  + TF+ FC  + +LHY+   T N
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFN 327


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 551 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TEN 658
           WHS+   +  CL  + TF+ FC  + +LHY+   T N
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFN 327


>Z68338-4|CAE48509.1|  104|Caenorhabditis elegans Hypothetical
           protein T24B8.3b protein.
          Length = 104

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 689 EEMLDEEEGDDSQ--FKDEDNEEGEPKGKKA 603
           EE  D+E+ DD +    DED+ EGE +G  A
Sbjct: 51  EEEGDDEDADDEEDEVNDEDSSEGEGEGSDA 81


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 551 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TEN 658
           WHS+   +  CL  + TF+ FC  + +LHY+   T N
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFN 327


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 551 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TEN 658
           WHS+   +  CL  + TF+ FC  + +LHY+   T N
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFN 327


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 551 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TEN 658
           WHS+   +  CL  + TF+ FC  + +LHY+   T N
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFN 327


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 689 EEMLDEEEGDD--SQFKDEDNEEGEPKGKKAKMS 594
           +E  DEE+ DD   + KDE  +E + K KK+K S
Sbjct: 123 DEKKDEEKKDDKKDEKKDEKKDEKKEKSKKSKKS 156


>Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.8 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 9   YMYKQTIISFSF*NEKSFGKFNYMSTSSSLIQNDCLTKYLDDA 137
           Y YK  + S  F N+K+F       +S+  IQN C+    D A
Sbjct: 50  YCYKSYLESRDFNNDKTFVSGRACGSSNLCIQNGCVGTNTDKA 92


>AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical
           protein T28F2.4a protein.
          Length = 748

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -2

Query: 689 EEMLDEEEGDDSQFKDEDNEEGEPKGKKAKMS 594
           +E +++EE +D +F+DE+ E  E + ++  +S
Sbjct: 216 DEEIEDEEFEDEEFEDEEEEADEQEEEEEDVS 247


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 677 DEEEGDDSQFKDEDNEEGEPKG 612
           DE++GD+    D+ N+ GE KG
Sbjct: 488 DEDDGDNEDEDDDGNDVGEDKG 509


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 560 SWAMQLCLWHYSTFSLFCPWVHLLHY 637
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 680 LDEEEGDDSQFKDEDNEEGEPKGKKA 603
           L+  + D+S +++ED EE E K +KA
Sbjct: 214 LNHRDEDESDYENEDYEEEENKSRKA 239


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 352 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 391


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 329 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 368


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 491 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 530


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 440 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,724,511
Number of Sequences: 27780
Number of extensions: 260976
Number of successful extensions: 1126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)