Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3496
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0975 + 8223269-8224354                                           29   1.2  
03_06_0468 + 34153425-34153823                                         29   1.2  
01_05_0219 - 19433053-19433110,19433243-19433547                       27   2.7  

>07_01_0975 + 8223269-8224354
          Length = 361

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 165 SKPSQ-PAVSGACGMXNGPTAYGST 236
           S P++ P+ SGA G   GP++YGST
Sbjct: 309 SGPAEGPSPSGAAGPAEGPSSYGST 333


>03_06_0468 + 34153425-34153823
          Length = 132

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 285 AVRYVHHQCAXHXXHRMCYRMPLVH 211
           A R +H+QC     HR C+  PL +
Sbjct: 71  AARRLHYQCRPEHGHRACHTTPLTN 95


>01_05_0219 - 19433053-19433110,19433243-19433547
          Length = 120

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +3

Query: 183 AVSGACGMXNGPTAYGSTYDXXDEXRIGGGHNAQLNEWPWIVAL 314
           A SG  G  NGP A G            GG    + +W WI  L
Sbjct: 63  ASSGGGGGDNGPAAGGGDGGILGSSSGAGGALLSIRQWRWIWVL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,287
Number of Sequences: 37544
Number of extensions: 107979
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)