Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3496
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 30 0.34
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 25 3.7
AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical ... 26 7.3
Z74475-4|CAD01086.1| 185|Caenorhabditis elegans Hypothetical pr... 25 9.7
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 25 9.7
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 25 9.7
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 25 9.7
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 171 PSQPAVSGACGMXNGPTAYGSTYDXXDEXRIGGGHNA 281
P PA G CG P G Y + IGGG+ A
Sbjct: 69 PPAPACGGGCGGGVAPAPIGGGYAQAPQAPIGGGYAA 105
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 4 RLTTQRQPIHLQWVSRNHHKLNQHHPLLLGEQSRPVPPSLQRNXHGLQHXQR 159
R +RQ Q ++ HH+ QHH Q P P+ H +H +R
Sbjct: 668 RQQQERQQQDRQQQAQQHHQAQQHH-----SQQHPAQPAQPSQDHHEEHRRR 714
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 4 RLTTQRQPIHLQWVSRNHHKLNQHHPLLLGEQSRPVPPSLQRNXHGLQHXQR 159
R +RQ Q ++ HH+ QHH Q P P+ H +H +R
Sbjct: 668 RQQQERQQQDRQQQAQQHHQAQQHH-----SQQHPAQPAQPSQDHHEEHRRR 714
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 16 QRQPIHLQWVSRNHHKLNQHHPLLLGEQSRPVPPSLQRNXHGLQH 150
Q+ I Q V HH+ +HH +L EQ + P + + H QH
Sbjct: 1021 QQMQIQKQKVQEQHHQQIRHHQMLKQEQRQNHNP-MHQIEHFQQH 1064
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 24.6 bits (51), Expect(2) = 3.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 52 NHHKLNQHHPLLLGEQSRPVPPSLQRNXHGLQHXQR 159
NHH+ N HH P P + + H QH R
Sbjct: 469 NHHQYNGHHE--RANSYNPYPENSRNFSHQSQHSGR 502
Score = 20.6 bits (41), Expect(2) = 3.7
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 49 RNHHKLNQHH 78
RN+H N HH
Sbjct: 421 RNYHPYNNHH 430
>AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical
protein C04E12.4 protein.
Length = 609
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 7 LTTQRQPIHLQWVSRNHHKLNQHHPL 84
L TQ +PIHL+ S+N + Q+ P+
Sbjct: 69 LATQEEPIHLENDSQNRYVEFQYDPI 94
>Z74475-4|CAD01086.1| 185|Caenorhabditis elegans Hypothetical
protein R04F11.5 protein.
Length = 185
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 240 DXXDEXRIGGGHNAQLNEWPW 302
D D+ RI ++ L +WPW
Sbjct: 123 DYNDKLRIYSSQDSNLKDWPW 143
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 58 HKLNQHHPLLLGEQSRPVPP 117
H+ +QH P++L + P PP
Sbjct: 389 HQHHQHRPIMLAPRHHPPPP 408
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 58 HKLNQHHPLLLGEQSRPVPP 117
H+ +QH P++L + P PP
Sbjct: 426 HQHHQHRPIMLAPRHHPPPP 445
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 58 HKLNQHHPLLLGEQSRPVPP 117
H+ +QH P++L + P PP
Sbjct: 426 HQHHQHRPIMLAPRHHPPPP 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,698,207
Number of Sequences: 27780
Number of extensions: 80913
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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