Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3493
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 577  EGCDASSH*GTASRGSWLAGTFALNISKR 491
            +G  +S     +S GSW AGT +    KR
Sbjct: 1064 DGITSSGSDSGSSNGSWTAGTVSQQKQKR 1092


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 176 AEATPASIRTHTNPDISL-FSKAPCTFSQEQTQA 78
           AEA PA I  HT   + L  +  P      Q QA
Sbjct: 656 AEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQA 689


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 66 YFLNLNFNFKASRGLTG 16
          Y+L   F+F  SRG+ G
Sbjct: 20 YYLTSTFDFWKSRGVVG 36


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 1   PTSVIARQASGGFEVKIQI*KVSYHSACV 87
           P  V+   A G FEV +      YH   V
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLV 141


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 364 SETAPPPNDLGSIHREA 414
           S T PP  D  SIH E+
Sbjct: 54  SMTIPPSIDRSSIHEES 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,153
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)