Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3491
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   3.8  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    26   5.0  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    25   8.7  

>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 254 FP*STWRHEVNFSNRNPYFRTYSR*LIKKAVRQSKVIIIH 373
           F  + W   V F  RNP  R +    ++ A +    ++IH
Sbjct: 181 FQRNNWNRVVAFQTRNPMHRAHRELTVRAAKQHGARVLIH 220


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 738 PIAHLPSVDPLKF*NFFFENLCK 670
           P+ HL SVD L F  +FF  L K
Sbjct: 202 PVFHLQSVDNLNFSTWFFWQLIK 224


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 63  HEVDFSNPKPCFRTYRR 113
           ++VD  +PK CFR ++R
Sbjct: 317 YKVDLDDPKDCFRWFKR 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,241
Number of Sequences: 5004
Number of extensions: 64559
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)