Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3490
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   3.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.8  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   6.6  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    26   6.6  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.7  

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -3

Query: 580 LFLKTHFHRNTCS*ILSNKTNTLVVYLFRNNNDMPRARAKTYLFKQRFRTRNQRNHHLLR 401
           +F     HR+T S    + T+   + +  N ND P A      FK     RN  +   L+
Sbjct: 19  IFCTQKLHRSTVSKFFEHPTSKRSIGVTENGNDSPEA------FKNELDNRNNADSQSLQ 72

Query: 400 SRND 389
           S  +
Sbjct: 73  SSTE 76


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 108  HYTSCIRSSDVIISEYSYSYANQSR 34
            HY+ C++  ++I SEY Y + N++R
Sbjct: 1084 HYSECVKLLEIIKSEY-YLFFNRNR 1107


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = -2

Query: 728 GPDIKKPHLRSFQSFVDKKSLNSTYIKTGGEISALRARERKP--------KDINFKVPIP 573
           G  + +P    F+S     S N T I   G+ + + +    P         D+ F++P P
Sbjct: 161 GSSVYQPPYTPFRSVSTTSSSNDTSITPFGDQTPILSSSSDPYATHRVWSMDLPFEIPFP 220

Query: 572 QNSLPPEHMFVN 537
           +NS  P    +N
Sbjct: 221 ENSEIPSTFELN 232


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 174 YYYYLGPSNKRLGQKLAGNMYNHYTSCIRSSDVIISE 64
           YYY  G SNK +G+ L+  MY  Y    +  +  + E
Sbjct: 260 YYYISGRSNKDIGE-LSKKMYLMYKQAYKDLNASLRE 295


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 221 LNIIINSFCVFIPFA*LTLIDCIQILILDSVVRQCEIEMELCI 349
           LNIIIN     IP   L    C  I  L + +  CEI    CI
Sbjct: 30  LNIIIN----LIPLVLLFAFFCPCIYFLHTFLADCEIAKSTCI 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,854
Number of Sequences: 5004
Number of extensions: 59266
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)