Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3490
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751...    30   1.7  
03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601...    30   1.7  
03_05_0678 + 26668505-26668576,26669447-26669513,26670118-266702...    29   3.0  
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019...    28   6.9  

>03_06_0301 -
           32974276-32974638,32974842-32974967,32975056-32975131,
           32975935-32976130,32976666-32976759,32977773-32978195
          Length = 425

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 425 PTQSPFIKKQKRPQNLSVVSLWRAFGCIAPSR 330
           P +   + KQK  ++L+ V++WRA G + P R
Sbjct: 119 PVEYNAMLKQKLEKDLAAVAMWRASGTVPPER 150


>03_03_0137 -
           14759337-14759508,14759616-14759813,14759917-14760116,
           14760197-14760310,14760386-14760572,14760984-14761225,
           14762326-14762424,14762505-14762836,14762931-14763039
          Length = 550

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 425 PTQSPFIKKQKRPQNLSVVSLWRAFGCIAPSRSRTAGLQNLISIFGYNQSKLITRKV 255
           PT    +   + P+NL  V LW  F  +       A +  L+ +  +NQ  ++T+KV
Sbjct: 415 PTALLIVTAIRNPENLHTVPLWILFESVMSMHRLRAAVAGLLQLQEFNQ-WIVTKKV 470


>03_05_0678 +
           26668505-26668576,26669447-26669513,26670118-26670253,
           26670294-26670321,26672381-26672482
          Length = 134

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 147 KRLGQKLAGNMYNHYTSCIRSSDVIISEYSYSYANQSRGVNDS 19
           +R  Q+L   M +H  + I    + IS Y  +YA  SRGVNDS
Sbjct: 93  RRQQQQLVQGMESH--TGINGVALKISHYLLNYAAMSRGVNDS 133


>08_02_1372 +
           26500093-26500154,26500733-26500933,26501858-26501936,
           26502652-26502752,26503417-26503516,26503893-26503934,
           26504026-26504067,26504352-26504509,26504708-26504780
          Length = 285

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 404 KKQKRPQNLSVVSLWRAFG 348
           KK+K+PQ+L V++ WR+ G
Sbjct: 8   KKKKKPQSLLVLTSWRSIG 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,434
Number of Sequences: 37544
Number of extensions: 344963
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)