Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3490
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    28   8.1  
L08403-1|AAA28025.1|  810|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 707 HLRSFQSFVDKKSLNSTYIKTGGEISALRARERKPKDINFKVPIPQNSLPPEH 549
           HL+  + F+D+      ++K    +  L A  + P  +N   P P N +P  H
Sbjct: 641 HLKYERRFIDENEYTERHLKFAENLKILTANYKAP--VNIPPPHPINRIPRIH 691


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 692 QSFVDKKSLNSTYIKTGGEISALRARERKPKDINFKVPIPQNSLPPEHMFV 540
           +S +DK+S   TY  T    + L+  E   KDI         SLPPE MF+
Sbjct: 61  RSVLDKRSCRDTYQITMAVQNYLKLSEAFKKDIENMNTF--KSLPPEKMFM 109


>L08403-1|AAA28025.1|  810|Caenorhabditis elegans Hypothetical
           protein F42H10.5 protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +1

Query: 169 IIKNCSFVLGPPHSTPSAKYNNKFILRFYTFRVINFD*LYPNIDIRFCSPAVRDRDGAMH 348
           I+ +C+++L  PH++  A +  K    +  F+ +  +     +D +   P +   DGA H
Sbjct: 72  IVGDCTYMLKGPHTSTLACHLKKHTREYSEFQKLKTEYSRTKLDQQ---PKI--PDGAPH 126

Query: 349 PNARQRETTDRFCG 390
           P   Q + T R  G
Sbjct: 127 PLTLQTQNTPRQTG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,988
Number of Sequences: 27780
Number of extensions: 327141
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)