Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3489
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    75   5e-15
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   2.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   2.8  
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.4  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   8.4  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 37/70 (52%), Positives = 48/70 (68%)
 Frame = +2

Query: 77   KSVFEVGLLSNRMFLAAVTLSLLGQALIIYFPPLQSVFHTEALTAHDILFLVGLTSSVFI 256
            KSVF++G+ SNRMF  AV  SL+GQAL++Y  P Q +F TEA+   D+L L+  TSSV  
Sbjct: 814  KSVFKLGIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQTEAIGLKDVLILLACTSSVLW 873

Query: 257  VSEIKKLIER 286
            V EI+K   R
Sbjct: 874  VDEIRKWYRR 883



 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 16  TFTCFVLFDMFNALSCRSQ 72
           TFTCFV FDMFNAL+CRS+
Sbjct: 794 TFTCFVFFDMFNALACRSE 812


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 286 AFDKLFNFAYYKHARCKTDQEQYIVRGERLRMEHTLQRREVDDQGLTQQT 137
           +++K +     ++AR K   +QYI R  R       + +EVD++  + +T
Sbjct: 73  SYEKRYQERDREYARSKNIPDQYIGRSPRPTSHRHAEEKEVDNKTKSDET 122


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 199  LRMEHTLQRREVDDQGLTQQTQRDCGQEHAVG 104
            +RM H+LQ    D+ GLT  T       +A G
Sbjct: 1208 IRMNHSLQTFSTDNSGLTSLTVHSHAPVYATG 1239


>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 246 LDVRPTRNSISCAVSASVWNT 184
           + +R  +N +SC VSA+ W T
Sbjct: 75  MHLRDLKNHLSCNVSATPWRT 95


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 428 VVRVVGPRSVTSLALAPLTASCQTRVI 348
           ++ ++GP S++  AL PLT   +T V+
Sbjct: 249 LISILGPTSLSEAALPPLTDVQRTSVL 275


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 412 PTTRTTDSAGWTRQVN*LIMRLID 483
           P T T +SAGWT +    I+R +D
Sbjct: 317 PATGTPESAGWTTRELRTILRGLD 340


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 4   TRPCTFTCFVLFDMFNALSCRSQHQVRVRGGAALQPHVPGRSHAESAGSGPDHLLPAAAE 183
           T P TF  F   D+  AL    +H  +V    A    + G   A   G+   HL      
Sbjct: 713 TYPSTFGIFEP-DVKEALEVIHEHGGQVYFDGANMNAMVGLCKAGDIGADVCHLNLHKTF 771

Query: 184 CVPYGG 201
           C+P+GG
Sbjct: 772 CIPHGG 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,360
Number of Sequences: 5004
Number of extensions: 36095
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)