Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3487
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   1.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.9  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
 Frame = +1

Query: 7   TQWLSQPPVAEWQAPSIFSIRLFTSAPKNAY*SASRP----KLRHILLIQ*AAKTAS--- 165
           T+ L+ PPV     P+  +I   T  P   Y   SR     K+   L+    +   S   
Sbjct: 338 TKGLTLPPVPTESVPNDINIYFGTRLPNEIYFYISRGLIPCKMIGALVSGCFSDPVSILE 397

Query: 166 QHLRGRIREGTQGQIQGSLVPGTDRAGAL 252
           QH+  +  +GT       L PG D A A+
Sbjct: 398 QHIGDKASQGTFSGANSGLNPGRDNAAAV 426


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 149  LPRRRVNIFGEELEKALKDKFRGHWYPAQTVPGLCVPMPENW 274
            LP R       EL     D F GH      +P +C+P  + W
Sbjct: 1800 LPAREFVCKAIELNLFATDFFLGHLLLFFMLPVICIPYIDRW 1841


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,518
Number of Sequences: 5004
Number of extensions: 36727
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)