Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3487
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619           30   0.80 
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    27   4.3  
04_04_0897 - 29186821-29187459                                         27   4.3  
01_06_0673 + 31089846-31090132,31090258-31090453                       27   4.3  
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695...    27   7.5  
06_01_0758 + 5668750-5669080,5670545-5670738,5670858-5670891,567...    26   9.9  
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868...    26   9.9  

>07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619
          Length = 314

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 115 PKLRHILLIQ*AAKTASQHLRGRIREGTQGQIQGSLVPGTDRAGALRSDA*KLEAHW 285
           P LR +L     A+ A++  R + REG  G +    VPG  R  ++  DA +    W
Sbjct: 102 PSLRSLLA---TAQAAARWRRKKEREGVAGLVASGAVPGVGRRKSVTVDAVRSLQRW 155


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 403 RYGMILHLDQPRQPDPWAGVSSTSR 329
           RY + L   QPR+P  W G+    R
Sbjct: 234 RYKICLRFTQPREPAHWEGIQGVRR 258


>04_04_0897 - 29186821-29187459
          Length = 212

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 77  LVLPKMHIEVQVALNFVISYL---YNKLPRRRVNIFGEELEKALKDKFRGHWYPAQTVP 244
           L+LPK  + + + L ++  +L   ++ +    +   G+E +  L+D  R H  PAQ +P
Sbjct: 11  LLLPKQLLHLLLLLGYIRRFLLWAFHAVGLGDLLDLGDEQQAVLQDHAREHRAPAQALP 69


>01_06_0673 + 31089846-31090132,31090258-31090453
          Length = 160

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 280 HW--IQCLKERRGSRECPYVMYY*HLPRDLAVWV 375
           HW   Q L+ERR S  CP + Y   +   LA WV
Sbjct: 76  HWPISQALRERRTSSGCPLLRYTKRVWTLLASWV 109


>06_02_0333 +
           14567509-14568081,14568109-14568438,14568642-14569550,
           14569598-14569777,14570416-14570698,14571339-14571832
          Length = 922

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 167 NIFGEELEKALKDKFRGHWYPAQTVPGLCVPMPENWRPTGSSA*KSG 307
           +IF EE+ K+L+ K  G W   +     C P+  N  P G++    G
Sbjct: 293 HIFKEEITKSLQMKLGGFWGNPRGGKSTCDPLYPN--PAGTNGMSKG 337


>06_01_0758 +
           5668750-5669080,5670545-5670738,5670858-5670891,
           5670986-5671896
          Length = 489

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 380 GSTQTARSLGRC**YITYGHSRLPRRSFKHWIQWASSFQASERR 249
           G    A +LGR     TYG  R+   +   W+  ASS +    R
Sbjct: 326 GGEADAAALGRLDGVYTYGQPRVGDAALGEWVAAASSLEGKHLR 369


>02_05_0209 -
           26786399-26786449,26786533-26786625,26786721-26786861,
           26786973-26787050,26787146-26787247,26787595-26787693,
           26787804-26787875,26787964-26788104,26788222-26788503
          Length = 352

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 56  FSPYDCSLVLPKMHIEVQVALNFVISYLYNKLPRRRVNI-FGEELEKALKDKFRGHW 223
           +S    ++ + ++ IE +V +N ++  + +  PRRR+N+ FGE+     +D     W
Sbjct: 38  YSSSGMNVGVSRLKIE-EVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAW 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,894
Number of Sequences: 37544
Number of extensions: 286555
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)