Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3486
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    42   5e-05
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    28   0.71 
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    28   0.71 
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    27   1.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.6  
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    24   8.8  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    24   8.8  

>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +2

Query: 71  KIRGLVTYKISAHEQRAYVGAISNGIPNIFRRFRESVFKVAPPFIIGYLIY 223
           K +G++TY +S  +QR   G       N+FRR       VA PF I Y IY
Sbjct: 21  KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIY 71


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 107 HEQRAYVGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRLSRKNPADFE 280
           H  R YV   SNG+  I   F+  +FK A    I  L +  + RE   L      DF+
Sbjct: 345 HSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITREASLLYCLPSTDFQ 401


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 137 SNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 238
           + G   +++    ++ KVAP   I YL+YE  ++
Sbjct: 388 NEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 282 FSKSAGFFRDSL*CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGIPFEIAPT 124
           +SKS      S+  +  TP Y+  P     AT K LS+ +L I  +   +  T
Sbjct: 377 YSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKNLSQPILSITSVDVNLVIT 429


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 305  LQTMFIDHFQNQQGSSVIVCDA 240
            L ++ +DHFQN   SS  + DA
Sbjct: 940  LHSLIVDHFQNDSNSSADLLDA 961


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 50  KHFGELAKIRGLVTYKISAHEQRAYVGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 229
           +  G++     L TYK+         GA+  G+P+ +   +  V        +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 230 V 232
           V
Sbjct: 80  V 80


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 50  KHFGELAKIRGLVTYKISAHEQRAYVGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 229
           +  G++     L TYK+         GA+  G+P+ +   +  V        +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 230 V 232
           V
Sbjct: 80  V 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,634
Number of Sequences: 5004
Number of extensions: 27843
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)