Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3486
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0779 - 5823389-5823787 29 1.6
05_07_0042 - 27265687-27267159 29 1.6
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 29 2.2
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 28 3.8
01_06_0624 - 30683249-30684631 28 3.8
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 5.0
01_05_0225 - 19501643-19501903,19503974-19504477 27 6.6
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 27 8.7
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088... 27 8.7
>06_01_0779 - 5823389-5823787
Length = 132
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 156 ILGIPFEIAPTYARCSWADIL*VTRPRILASSP 58
+LGIP T +RC W VT PR++ S+P
Sbjct: 67 VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97
>05_07_0042 - 27265687-27267159
Length = 490
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 165 LLKILGIPFEIAPTYARCSWADIL 94
++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 193 GYFKNALTKSSEDIRNTI*NSSNICSLFMGRYLVGDKTPNFS 68
G+F N L + R+ + N+ +I SL Y +G P+F+
Sbjct: 310 GFFANTLKRHGRGERSDVGNNDSIESLLDPEYALGKDAPDFT 351
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 153 ISSEDFVRAFLK*PRPSSLDT*YMKELKGSITDYHGRTLLILKMINK 293
I E F+R +L S T K+LKGS++ T +L +IN+
Sbjct: 80 IEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTLLHVINE 126
>01_06_0624 - 30683249-30684631
Length = 460
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 243 CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 145
C+ + SY+ P+M+ + + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 89 TYKISAHEQRAYVGAISNGIPNIFRRFRESVFKV 190
TYK+SAH + Y+ + I RRF+ F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 250 SVMLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 140
S +LP+ + VSN+E + + KSS+D R +I
Sbjct: 158 SPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 143 GIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRL 253
GIP +R ++ + P +I + YE + R H+L
Sbjct: 275 GIPGFYRGCATNLLRTTPNAVITFTSYEMINRLMHQL 311
>01_03_0246 -
14207899-14208052,14208132-14208206,14208682-14208801,
14208905-14208981,14209204-14209285,14209439-14209485,
14209561-14209681,14210188-14210235,14210478-14210569,
14211001-14211057,14211203-14211273,14211376-14211493,
14211574-14211621
Length = 369
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 200 FIIGYLIYEGVEREHHRLSRKNP 268
F+IGYL++ G ++ H + +K+P
Sbjct: 251 FVIGYLVFRGANKQKH-VFKKSP 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,589,308
Number of Sequences: 37544
Number of extensions: 155924
Number of successful extensions: 362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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