Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3481
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 30 1.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 1.8
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 1.8
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 1.8
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 1.8
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 1.8
AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical ... 29 3.2
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 25 3.8
Z69716-6|CAA93525.1| 124|Caenorhabditis elegans Hypothetical pr... 27 7.3
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 27 7.3
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 27 7.3
Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 27 9.6
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 505 CCPGGPGATSLPDRLGPPFLP 567
CCPGGPG P + G P P
Sbjct: 120 CCPGGPGPNGKPGKPGRPGKP 140
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 508 CPGGPGATSLPDRLGPPFLPFFSG 579
C G GA +P R GPP +P F G
Sbjct: 124 CNGTDGAPGIPGRPGPPGMPGFPG 147
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 508 CPGGPGATSLPDRLGPPFLPFFSG 579
C G GA +P R GPP +P F G
Sbjct: 124 CNGTDGAPGIPGRPGPPGMPGFPG 147
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 508 CPGGPGATSLPDRLGPPFLPFFSG 579
C G GA +P R GPP +P F G
Sbjct: 124 CNGTDGAPGIPGRPGPPGMPGFPG 147
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 508 CPGGPGATSLPDRLGPPFLPFFSG 579
C G GA +P R GPP +P F G
Sbjct: 124 CNGTDGAPGIPGRPGPPGMPGFPG 147
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 508 CPGGPGATSLPDRLGPPFLPFFSG 579
C G GA +P R GPP +P F G
Sbjct: 124 CNGTDGAPGIPGRPGPPGMPGFPG 147
>AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical
protein K12C11.7 protein.
Length = 166
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 341 IHTYVHMRRNVLFFLQNFFFYSPKKTAMGY 252
I ++ H + LFFLQNF YS AM Y
Sbjct: 101 ISSWRHFASSFLFFLQNFVDYSLMLVAMTY 130
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 24.6 bits (51), Expect(2) = 3.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 511 PGGPGATSLPDRLGPP 558
PG PG TS P GPP
Sbjct: 207 PGNPGYTSPPGLPGPP 222
Score = 22.2 bits (45), Expect(2) = 3.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 532 SLPDRLGPPFLP 567
SLP R GPP LP
Sbjct: 252 SLPGRKGPPGLP 263
>Z69716-6|CAA93525.1| 124|Caenorhabditis elegans Hypothetical
protein C04B4.6 protein.
Length = 124
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 422 LPIARKPAHRSPTEHCASNI--LDCHFRCIHTYVHMRRNVLFFLQNFFFYSPKK 267
+PIA K + C + + F CI+T ++++R L F +FF ++P K
Sbjct: 1 MPIAEKILRFAEKSGCRKALYSMPLAFCCINT-INIKRGKLNFRSSFFAFTPNK 53
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 511 PGGPGATSLPDRLGPPF 561
PGGPGA LP GP +
Sbjct: 15 PGGPGAPGLPGAAGPAY 31
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 505 CC-PGGPGATSLPDRLGPPFLP 567
CC PG PG LP R G P +P
Sbjct: 92 CCKPGHPGRPGLPGRNGKPGVP 113
>Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical
protein M176.3 protein.
Length = 169
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 272 LVNRKKNFEEKI----KHFVAYVRTYVCTENDN 358
L RKK F++ + K F AY R VC +N+N
Sbjct: 99 LEERKKIFDDTVERVQKQFFAYHRENVCQDNEN 131
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 499 YNCCPGGPGATSLPDRLGPPFLPFFSG 579
++C PG PG R GPP P SG
Sbjct: 187 FDCPPGEPGRQGKQGRKGPPGRPGGSG 213
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 275 VNRKKNFEEKIKHFVAYVRTY 337
VNRKK FEE++K F TY
Sbjct: 179 VNRKKQFEEELKQFETGEFTY 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,284
Number of Sequences: 27780
Number of extensions: 221880
Number of successful extensions: 752
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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