Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3481
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.94 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 359 DCHF-RCIHTYVHMRRNVLFFLQNFFF 282
           DC + RCI    H+RR +L + +N  F
Sbjct: 3   DCPYARCIQERRHIRRELLRWTKNMVF 29


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 321 HMYVRMYAPKMTIENVRSAVLRR*AVCWLPRYRQ 422
           H   +    + TI  + SAV+    +CW P + Q
Sbjct: 246 HGETKQVQSRKTITRMLSAVVITFFICWAPFHVQ 279


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 416 IARKPAHRSPTEHCASNILDCHFRCIHTYV 327
           +AR+    +   HC   IL+    C H  V
Sbjct: 1   VAREFYSEADASHCIQQILESVHHCHHNGV 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,987
Number of Sequences: 438
Number of extensions: 2687
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)