Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3475
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 91 1e-19
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 75 7e-15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 57 2e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 52 9e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 51 1e-07
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 9e-07
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 46 3e-06
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 46 5e-06
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 44 1e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 39 7e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 37 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.003
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.005
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 34 0.015
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.020
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.026
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 33 0.026
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.035
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.061
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.14
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 0.25
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.25
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 30 0.32
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.57
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.57
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 29 0.75
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 27 1.7
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 3.0
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 27 3.0
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.3
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 25 7.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 7.0
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.0
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 9.2
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 9.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.2
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 91.1 bits (216), Expect = 1e-19
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 13/199 (6%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPK-NELNSKPL 179
DPQT S+GYGFV + +++ +SA+ M GQ G R IR AT K A + +N P+
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPV 280
Query: 180 TFDEVYNQSSA---------SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGY 332
+ V S+A +N TV+ GGL+ ++EE ++ FQ FG I +++ KG
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGC 340
Query: 333 AFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQA---QGQLGGTAYSPFG 503
F++F ++SA AI + + ++ SWG+ +P + A Q Q+ T P
Sbjct: 341 GFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQ-NPIAAPALNYQSQVSQTTI-PAT 398
Query: 504 TAYTASGVPPASYWYNTYP 560
+ + A +PP + ++ YP
Sbjct: 399 SLFPAMSLPPQAQ-FSPYP 416
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 75.4 bits (177), Expect = 7e-15
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAP---KNELNSK 173
DP T S+ YGFV + + E + A+ M G R +R + A+ K A + L
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIV 276
Query: 174 PL-TFDEVYNQSSAS----NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAF 338
P T + NQ S N TV+ GGL + L+E+ +Q FQPFG I I++ KG F
Sbjct: 277 PTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGF 336
Query: 339 IRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNN-SQAQGQLGGTAY 491
+++S K +A AI + + ++ +WG + + SQ+Q Q+ +
Sbjct: 337 VQYSEKSAAEKAINTMQGALVGTSHIRLAWGHNTLPVSALSQSQSQVSDEGF 388
Score = 30.3 bits (65), Expect = 0.25
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Frame = +3
Query: 165 NSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----- 329
+S PL +V S + T++ G L + +Q+ + ++V + K
Sbjct: 69 SSTPL--QDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSET 126
Query: 330 ---YAFIRFSTKESATHAIVAVHNTDINGQ--PVKCSWGKESGDPNNS 458
Y F++FS+ +A A++ +NT I G K +W G +N+
Sbjct: 127 LISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNN 174
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 57.2 bits (132), Expect = 2e-09
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLT 182
D Q+ +SKGYG+V + A++A+ + + + R + + + +P P+ +
Sbjct: 297 DGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGN 356
Query: 183 FDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIR 344
F + Q S + TV+ G L+ TE+ + F G IQ IR+ D KG+ ++
Sbjct: 357 FGD---QLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Query: 345 FSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 482
FS +SA V ++ I G+P + + + +G GG
Sbjct: 414 FSDIDSAKKC-VEMNGHFIAGRPCRLDFSTPRTGGGSRGGRGGFGG 458
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Frame = +3
Query: 198 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKE 359
+Q S CTV+ G L+ + ++ + + F+ +GTI RV D KGY ++ F T E
Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Query: 360 SATHAIVAVHNTDINGQPVKCSWGK---ESGDPNNSQAQGQLGGTAYSPFGTAYTAS 521
+A A+ A +I+G+ V + P Q G G P T + +
Sbjct: 316 AAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGN 372
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 51.6 bits (118), Expect = 9e-08
Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 6/184 (3%)
Frame = +3
Query: 9 QTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFD 188
Q K +G+GFV+Y A+ A+ +N + + + A +K + EL +
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER-EEELRKRYEQM- 353
Query: 189 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFST 353
++ + ++ L + +E ++ F FGTI ++ D KG+ F+ ++T
Sbjct: 354 KLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTT 413
Query: 354 KESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQL-GGTAYSPFGTAYTASGVP 530
E A A+ ++ + G+P+ + + + SQ + Q+ + A+G+P
Sbjct: 414 PEEANKAVTEMNQRMLAGKPLYVALAQRK-EVRRSQLEAQIQARNQFRLQQQVAAAAGIP 472
Query: 531 PASY 542
Y
Sbjct: 473 AVQY 476
Score = 46.0 bits (104), Expect = 5e-06
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Frame = +3
Query: 147 APKNELNSKPLTFDEVYNQSSAS--NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK 320
A +E S P V S + + ++Y G L +TE ++ + F G + IRV +
Sbjct: 54 AEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR 113
Query: 321 DK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPN 452
D GYA++ F E A+ ++ T I G+P + W + DP+
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR--DPS 161
Score = 44.4 bits (100), Expect = 1e-05
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLT 182
D T +S GY +V++ + E A+ +N + R R W+ R P K +
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGN---- 169
Query: 183 FDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRF 347
V+ L + + + TF FG I +V D KGY F+ F
Sbjct: 170 --------------VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHF 215
Query: 348 STKESATHAIVAVHNTDINGQPV 416
+ ESA AI V+ +N + V
Sbjct: 216 DSVESANAAIEHVNGMLLNDKKV 238
Score = 44.0 bits (99), Expect = 2e-05
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Frame = +3
Query: 21 SKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYN 200
+KGYGFV + A +AI +NG L + + + E SK
Sbjct: 207 AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG-----HHVSRRERQSK-------VE 254
Query: 201 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESA 365
A+ VY L T +TE+ F FG I + + KD +G+ F+ ++ E A
Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECA 314
Query: 366 THAIVAVHNTDINGQ 410
A+ +++ + G+
Sbjct: 315 QKAVDELNDKEYKGK 329
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 51.2 bits (117), Expect = 1e-07
Identities = 33/149 (22%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNS-KPL 179
+P+T +++GYGFV++ +A+ A + + L R +R ++AT P ++E+++ +
Sbjct: 39 NPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFAT---PRKRSEVDTDQNK 95
Query: 180 TFDEVYNQSSASNCTVYCGGLTTGLTE-ELMQKTFQPFGTIQEIRV-----FKDKGYAFI 341
+ Q + + L + + + ++ F FG ++EI++ + G+AF+
Sbjct: 96 AVKKTIRQDNRPRLII--RNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFV 153
Query: 342 RFSTKESATHAIVAVHNTDINGQPVKCSW 428
+++A A+ +++ T+I+G+P+ W
Sbjct: 154 WMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Score = 31.9 bits (69), Expect = 0.080
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 27 GYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRK 140
G+ FV + AE A+ S+NG + R I +WA K
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI---RTNWATR----KPPAPKNELNSKP 176
+SKG+GF+ ++ A A+ +NG+ + + I WA + +P P + N +P
Sbjct: 537 RSKGFGFMQFISHKYALMALRWLNGREITVKKIIDAEIEWARKHKIPEPQLPNIDYNDRP 596
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 48.4 bits (110), Expect = 9e-07
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Frame = +3
Query: 48 LKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCT- 224
+ S++ +++ + N S N +TR + N NS P D + T
Sbjct: 529 VSSSKSTASLNTNNNGLRASTPEMANISTRSS-SESNNTNSWPTVGDATIENLTQHEPTH 587
Query: 225 -VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 401
++ G L +G++ + TF +GT+ IR+ K AF+ F + E+A H + ++ I
Sbjct: 588 ALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRI 647
Query: 402 --NGQPVKCSWGKESGDPNNS 458
PV S+ K + + S
Sbjct: 648 FFGSDPVCISFAKVASSSSES 668
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 46.4 bits (105), Expect = 3e-06
Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +3
Query: 15 LKSKGYGFVSYLKKSEAES--AITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFD 188
L+ K FV+++ A +++++G + +R ++ W P P N +
Sbjct: 354 LQEKHICFVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAV----- 408
Query: 189 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESAT 368
+ ++ +Y G LT E +++ F+ FG I+ + F++K AF+ F++ SA
Sbjct: 409 -----AGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAI 463
Query: 369 HAIVAVHNTDINGQPVKCSWGKE-SGDPNNSQAQGQL 476
+AI + + + S+GK+ G+P + ++ +
Sbjct: 464 NAIDRIKQKK-GYENYRISYGKDRCGNPPRTNSKSDV 499
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +3
Query: 201 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAI 377
Q S + V+ G L G+TE+ +++ +PFG I +I++ ++ AF+ F +A A+
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAV 258
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +3
Query: 216 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATH--AIVAVH 389
N TVY G + T E + + G + IR ++K F+ F SA + +H
Sbjct: 322 NRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIH 380
Query: 390 NTDINGQPVKCSWGKESGDPNNSQAQGQLGGTA 488
I + +K WGK SG ++ A GG +
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGAS 413
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 46.0 bits (104), Expect = 5e-06
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Frame = +3
Query: 216 NCTVYCGGLT-TGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAV-H 389
N T+Y GG+T T EE++ + F +G I+ IRV +G AFI + + +A A A+ H
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAH 232
Query: 390 NTDINGQPVKCSWGKESGDPN-NSQAQGQ 473
+ + + + W + DPN SQA+ Q
Sbjct: 233 QSLDHDECLNVRWA--TTDPNPASQARNQ 259
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 9 QTLKSKGYGFVSYLKKSEAESAITSMNGQWLG-SRSIRTNWATRKPPAPKNELNSKPL 179
+ L S+G F++YL ++ A+ A +M Q L + WAT P N + L
Sbjct: 205 RVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRL 262
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/70 (24%), Positives = 39/70 (55%)
Frame = +3
Query: 222 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 401
T++ GG+T + E +++ F+ FG++Q + + + + F++ +++A A VA+ N
Sbjct: 407 TLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPF 466
Query: 402 NGQPVKCSWG 431
++ WG
Sbjct: 467 ADTTIRTKWG 476
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 30 YGFVSYLKKSEAESAITSMNGQWLGSRSIRTNW 128
+GF+ ++ AE A +M +IRT W
Sbjct: 443 HGFLKMFRRDAAEKAQVAMENVPFADTTIRTKW 475
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3
Query: 6 PQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPK 155
P T SKGYGFVS+ EA AI ++NG G + + N+A ++ K
Sbjct: 456 PSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKK 505
Score = 34.3 bits (75), Expect = 0.015
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Frame = +3
Query: 198 NQSSASNC--TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKG--------YAF 338
N+ S C ++Y G L + + + F+PFG + + K+K +AF
Sbjct: 11 NKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAF 70
Query: 339 IRFSTKESATHAIVAVHNTDINGQPVKCSW 428
I F K SA +AI +++ + G +K +
Sbjct: 71 ITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRK 140
+SKGYGFVSY A++AI +MN Q+L ++ I ++A ++
Sbjct: 138 RSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR 178
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.7 bits (86), Expect = 7e-04
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 PQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTF 185
P S G+GFV + K+ A +A+ +MNG L + + + A E+ +
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAA-EVRKQ---- 713
Query: 186 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFS 350
+ S + L T++ +Q +G ++ +RV K +G+AF F
Sbjct: 714 ----DSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFV 769
Query: 351 TKESATHAIVAVHNTDINGQ 410
T A +A+ A+ NT + G+
Sbjct: 770 TAREAANAMRALKNTHLLGR 789
Score = 26.6 bits (56), Expect = 3.0
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Frame = +3
Query: 207 SASNCTVYCGGLTTGLTEELMQKTFQPF-GTIQE-IRVFKD---------KGYAFIRFST 353
S T+Y L +E QK F+P G + IR D G+ F+ F
Sbjct: 615 SLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
Query: 354 KESATHAIVAVHNTDINGQPVKCSWGKESGD 446
K SA A+ A++ ++G ++ + D
Sbjct: 675 KASAVAAMHAMNGFVLDGHKLEIKLSHQGVD 705
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKP 143
DP+T KGYGF + A+ +N LG R IR + + P
Sbjct: 41 DPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDP 87
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 0.001
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI-RTNWATRKPPAPKNELNSKPLTFDEV 194
+SKG +V + + ++AI + LG I + A + A + ++ + +
Sbjct: 279 RSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIP 338
Query: 195 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKE 359
+++ SN + LT+E ++ F+PFG I+ + + +D KG+ +I++
Sbjct: 339 FHRLCVSN-------IHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPI 391
Query: 360 SATHAIVAVHNTDINGQPVKCSWGKE 437
SA +A+ ++ D+ G+ ++ G +
Sbjct: 392 SARNALEKMNGFDLAGRNMRVCLGND 417
Score = 33.1 bits (72), Expect = 0.035
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVY 197
+SKG+G++ Y A +A+ MNG L R++R K +S FDE
Sbjct: 378 RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK--FTTETTSSMLKRFDETL 435
Query: 198 NQSSASNCTVYCGGLTT 248
+ S + GG +T
Sbjct: 436 ARQERSQPSQRNGGSST 452
Score = 29.5 bits (63), Expect = 0.43
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = +3
Query: 168 SKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KG 329
S+P ++ TV+ L LT + F+ G +++ ++ +D KG
Sbjct: 223 SRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKG 282
Query: 330 YAFIRFSTKESATHAIVAVHNTDINGQPV 416
A++ F E + A +A+ + G PV
Sbjct: 283 VAYVEF-CHEDSVQAAIALSGKRLLGLPV 310
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 27 GYGFVSYLKKSEAESAITSMNGQWLGSRSIRTN 125
G FV + AE AIT ++ +W G R+I+ +
Sbjct: 555 GQIFVKFENADFAEKAITGLHQRWFGGRTIKAS 587
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWAT 134
DP++ + KGYGF Y + A SA+ ++N G+R +R ++ T
Sbjct: 39 DPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPT 82
Score = 31.5 bits (68), Expect = 0.11
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 21/152 (13%)
Frame = +3
Query: 216 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 377
+C VY G + + EE + F+ G ++ ++ D KGY F + +A A+
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 378 VAVHNTDINGQPVKCSW---------GKESGD------PNNSQAQGQLGGTAYSPFGTAY 512
++N D + ++ + K G P + Q G + +
Sbjct: 64 RNLNNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSYANQSYTYGNNFGSYPPTQ 123
Query: 513 TASGVPPASYWYNTYPQQIGGFLXGGPRRAGV 608
++ P SY Y +YP G+ G R +GV
Sbjct: 124 PSTQPLPQSYGYPSYPP--AGYRGGSARPSGV 153
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNSKPL 179
K++G+GFVS+ + A NG+++GSR ++ + AT NE+N K +
Sbjct: 68 KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRAT--SDVKPNEVNEKTI 119
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +3
Query: 225 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GYAFIRFSTKESATHAIVAVH 389
++ G L + +E + + F + ++ + +V +D+ G+ F+ F + A +
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 390 NTDINGQPVKCSWGKESGDPN 452
I +PVK S PN
Sbjct: 92 GKYIGSRPVKLSRATSDVKPN 112
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.1 bits (82), Expect = 0.002
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +3
Query: 180 TFDEVYNQSSASNC--TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFST 353
T D Q S N TV+ G L T + + G +Q+ +K F+ F T
Sbjct: 394 TSDRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIR-HGGLQDFHYIPEKHICFVTFIT 452
Query: 354 KESAT--HAIVAVHNTDINGQPVKCSWGKESG 443
+A H +A ++G+ +K WGKESG
Sbjct: 453 YSAANAFHDYLAEEEVLLHGRRIKVGWGKESG 484
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPP 146
+P T S+G+GF+S+ EA SAI ++N Q R + A R P
Sbjct: 135 EPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 12 TLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAP 152
T +SKG+G V + +++A S+I +NG G R ++ ++A P P
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYATPLP 362
Score = 33.9 bits (74), Expect = 0.020
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Frame = +3
Query: 21 SKGYGFVSYLKKSEAESAITSMNGQ-WLG---------SRSIRTNWATRKPPAPKNELNS 170
SKG + Y EA +AI +++ Q ++G ++ R ++ P A N +S
Sbjct: 105 SKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDS 164
Query: 171 KPLTFDEVYNQSSASNCTVYCGGLTT---GLTEELMQKTFQPFGT-----IQEIRVFKDK 326
+P V N SS SN +Y T + + ++ F+ G+ IQ + + +
Sbjct: 165 EPDRQLFVGNVSSISN-PLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSR 223
Query: 327 GYAFIRFSTKESATHAIVAVHNTDINGQPVK 419
G + S+ + A HAI +HNTD G+ ++
Sbjct: 224 GIGIVVMSSMKEAMHAIQMLHNTDFMGRTLE 254
Score = 31.1 bits (67), Expect = 0.14
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Frame = +3
Query: 195 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-----KDKGYAFIRFSTKE 359
Y S+C +Y G L ++ + F G++ R+ + KG+ ++F +
Sbjct: 273 YPHGPCSDC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENEN 331
Query: 360 SATHAIVAVHNTDINGQPVKCSWGKESGD-PNNSQAQGQLGGTAYSP 497
A +I ++ G+P++ S+ + P L AY+P
Sbjct: 332 DAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 225 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 386
+Y G L G E+ M+ F FG + +R+ ++ K YAFI F + + A +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 387 HNTDINGQPVKC 422
HN + G+ ++C
Sbjct: 167 HNYLLYGKLLQC 178
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 34.3 bits (75), Expect = 0.015
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Frame = +3
Query: 147 APKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK 326
AP S + D ++ + + T+ L+ EE ++ F+ FG IQ + + KDK
Sbjct: 178 APHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK 237
Query: 327 ------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGK 434
G+AF+ + ++ A A + N ++C + K
Sbjct: 238 ETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 279
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.9 bits (74), Expect = 0.020
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Frame = +3
Query: 108 RSIRTNWATRKPPAPKNELNSKPLTFD--------EVYNQSSASNCTVYCGGLTTGLTEE 263
RS + T K P NE+ SK D + + ++ GG+ TEE
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEE 261
Query: 264 LMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCS 425
+ F FG + + + DK G+ F+ + ESA A ++ I+G+PV+
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE-NESAVEATMSQPYITIHGKPVEVK 320
Query: 426 WGKESGDPNNSQAQGQLG 479
+S + Q G
Sbjct: 321 RATPKASLRDSHDRHQHG 338
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.026
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 6 PQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRK 140
P + SKGYGFV++ + A A ++NG +G + I +A RK
Sbjct: 419 PNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 33.5 bits (73), Expect = 0.026
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 24 KGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNEL 164
+G F ++ EA++ + +NG + R +R W + PPA + +
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERV 319
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.1 bits (72), Expect = 0.035
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +3
Query: 183 FDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIR 344
F ++Q + + +Y G L L E+ + F FG +I + +D KG+AF++
Sbjct: 19 FSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
Query: 345 FSTKESATHAIVAVHNTDI 401
+ + S A+ + N +
Sbjct: 79 YEDQRSTVLAVDNMTNVKL 97
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.061
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Frame = +3
Query: 222 TVYCGGLTTGLTEELMQKTFQPFGTIQEI-----RVFKDKGYAFIRFSTKESATHAIVAV 386
T+Y G G+ + F+PFG + R + +AF+ + A A V
Sbjct: 8 TLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEV 67
Query: 387 HNTDI--NGQPVKCSWGKE---SGDPNNSQAQGQLGGTAYSPFGTAYTASGVP 530
H + G ++ W K+ SG + + + GG + G + S P
Sbjct: 68 HGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSP 120
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 252 LTEELMQKTFQPFGTIQEIRVFKD---KGYAFIRFSTKESATHAIVAVHNTDINGQPVKC 422
+ + +++ F +G + +++ K +G AF+ F E+A+ A+ + + G+P+
Sbjct: 41 MLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMI 100
Query: 423 SWGKESGD 446
+ K D
Sbjct: 101 QYSKSKSD 108
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Frame = +3
Query: 213 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 374
SNC VY G L+ TEE + F G I+ I + D+ G+ F+ + + A +
Sbjct: 31 SNC-VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
Query: 375 IVAVHNTDINGQPVKC--SWGKESGDPNNSQAQG 470
+ + T ++ + ++ G E G A G
Sbjct: 90 LKYISRTSLDERIIRADLDHGYEEGRQYGRGASG 123
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI 116
+ +G+GFVS+ + AI MNG+ +G ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.32
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 222 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVA 383
T++ L+ E +++ F +G I+ IRV ++K GYAF+ F + A A
Sbjct: 101 TMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 384 VHNTDINGQPV 416
+NG+ +
Sbjct: 161 SAGLMLNGRRI 171
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.57
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +3
Query: 258 EELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDIN 404
+E ++ F FG I +V +DK YAFI F KES A + N I+
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIR 119
DP T +S+G+G+V + + ++ SA +++G+ L R +R
Sbjct: 126 DPLTERSRGFGYVEF-ETADTLSAALALSGEDLMGRPVR 163
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +3
Query: 423 SWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTYPQQIGGFLXGGPRRA 602
++GK + N + G+ + T S PPAS T GGF G P
Sbjct: 151 NFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASL 210
Query: 603 G 605
G
Sbjct: 211 G 211
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 199 IRAPLAIARCTVEV*PPASPKNSCRRPSSHSELFRRSESSRTKDMLSSDSRQRK 360
I P +I ++ P P + +PSSHS + E + + +++R+ K
Sbjct: 264 IDGPQSIINSAIQHPIPVLPPYAKNQPSSHSVFLTKKEQKKIRRQTRAEARKEK 317
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 57 SEAESAITSMNGQWLGSRSIRTNWATRKPPAP 152
S+ E AIT N QW ++ KPP P
Sbjct: 341 SKVEEAITEANAQWYEAQGTVPVVENEKPPLP 372
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 153 KNELNSKPLTFDEVYNQSSASNCTVYCGG 239
K +NS L+ YNQ+ +N +YC G
Sbjct: 39 KTPINSPKLSSAGPYNQAIKANGVIYCSG 67
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/48 (18%), Positives = 26/48 (54%)
Frame = +3
Query: 252 LTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNT 395
+T++ + +P+G ++++ D+ +RF ++ A A A+ ++
Sbjct: 173 ITKKDIDNLLEPYGEVEDVTEIPDQSAFLVRFVYRDEAIAAYTALKHS 220
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 222 TVYCGGLT-TGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHAIVAVH 389
+++ G L T L+ F +G + + ++ K +AF+RF ++++A A+
Sbjct: 366 SIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKT 425
Query: 390 NTDINGQPVK 419
+ +P++
Sbjct: 426 RSPHQKKPLR 435
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 5.3
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)
Frame = +3
Query: 24 KGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWATRKPPAPKNELNS-------KPLT 182
KG+G+V +AE+A+ S G+ LG+R + + + K ++S K
Sbjct: 796 KGFGYVVMTTNQDAENAL-SAAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFE 854
Query: 183 FDEVYNQSSASNCTVYCGGLTTGLT-------EELMQKTFQPFGTIQEIRVFKDKGYAFI 341
E S+ + G+T E ++ F+ +G + + + + A +
Sbjct: 855 TTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEGAVV 914
Query: 342 RFSTKESATHAIVAVHNTDINGQ 410
F A A +A+ +I G+
Sbjct: 915 EFLDIHDAGKASLALEGHEIGGR 937
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 344 SDESISFVLEDSDLLNSSEWLEGLLHEFFGEAGGQTSTV 228
S ES +SD +NSSE + LL +AG STV
Sbjct: 149 SKESSEIGAPNSDEINSSEAVRNLLATISAQAGFGGSTV 187
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 447 PNNSQAQGQLGGTAYSP---FGTAYTASGVPPASYWY-NTYP 560
P + + +G+ T Y P FGT++T+S PP S +TYP
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYP 173
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 407 TVDISVVDSNDCVGGTFL----CRESDESISFVLEDSDLLNSSEWLEGLLHEFFGEAGGQ 240
TVD +++ ++ +G CR + +++ E ++ L L+ +FFG G
Sbjct: 456 TVDATIITPSEYLGDVIKLCESCRGLQKDCTYMSESRCMIKYQLPLAHLVEDFFGRLKGT 515
Query: 239 TS 234
TS
Sbjct: 516 TS 517
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 287 IRNYSGDQSLQGQRICFHQILDKGKCHPRNRCCPQ 391
++ SGD Q H L KG+ HPR+R P+
Sbjct: 64 LKGMSGDAKEQESATLVH--LTKGRAHPRSRRPPR 96
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1
Query: 70 DSASDFFKYETKPYPFDLRVCG 5
D F +Y KP P R+CG
Sbjct: 44 DEFDSFMEYMRKPLPTTFRICG 65
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +3
Query: 225 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-------KGYAFIRFSTKE 359
+Y GGL++ + ++ F FG++ + + + +A++ F T E
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Frame = +3
Query: 243 TTGLTEELMQKTFQPFGTIQEIRV---------FKDKGYAFIRFSTKESATHAIVAVHNT 395
T+ + +E+ ++ +P T Q R+ F++KG+A++ F+T+++ A+
Sbjct: 129 TSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKA 188
Query: 396 DINGQPV 416
+NG+ +
Sbjct: 189 -LNGRNI 194
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Frame = -2
Query: 123 WCGWTWSRATA------RSWM*SLIPPLIFSNTR 40
W W W A +SW+ L+P L +S T+
Sbjct: 516 WFYWNWDTENATQWSYKKSWLAGLLPRLAYSTTK 549
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 244 PPASPKNSCRRPSSHSELFRRSESSRTKDMLSSDSRQRKVPPTQ 375
P + + RRPS RS++S +D+ S R + PP +
Sbjct: 59 PNNGKEENHRRPSVARSSSDRSKASAKEDLFSEAFRMAEQPPAE 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,032
Number of Sequences: 5004
Number of extensions: 59569
Number of successful extensions: 259
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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